Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00750 ATGCTTGGTCATCGACCTTTGAGGTCAACTGGAGCTGCTATATTGGCTGCTGTTGGGCTTTTAGAAGGATGTTGTTTTAATTCAGGTTCCCGAATTATGGTTTTCACATCCGGACCTGCAACTATCGGCCCTGGAATTGTTGTAGATTCAGATCTAAGTAATTCCATCAGAACTCATCGAGATCTCATCAATGGCAACGCACCCTACTATAGAAAATCTTGCGGTTTCTATAATAAAGTGTCAAAGAGGTTGTCAGATTTATCAATTGTTATTGATTTGTTTGCATGTTCCCTCGATCAAGTTGGAATATCGGAATTGAAAGATCTTGTTGAAAGCTCGGGCGGATTCATGATGCATGGAGATTCATTTGAAAATGATCAGTTTAGACAGTGTTTGAGGCACATTTTCTCTCGAGACGAAGAGGGAAATTTAAATATGTATTTTGATGCTTCCATCGAAATAGTGACAACAAAAGATGTCAAAATCTGCGGGGCCCTCGGTCCGTGCGTTTCCCTGCAGAAAAGTAACAGTCTAGTGAGTGACACAAAGATAGGGGAGGGTGGTACTTACATATGGAAGATGGGTACCCTCACCAACAAGACTTGCATCTCCTTTTTCTTTCAAGTGAACCAAGGGGAAAATGTTCAAACGGGATCGGCATTCTTCATACAGTTCATAACACGGTATCGAAACGGGAACCTAGGAATTCGAAAAAGAGTAACGACAGCTGCCAGAAGATGGGTTGGGGCCAATTCGCCTGAGATTGCAGCTGGATTTGATCAAGAAACAGCTGCAACAGTAATGGCCAGACTTGCCATTAATCGAGCCGAGACTTGTCATGCTCGAGATGTAATTAGATGGCTCGATAATGTTCTAGTCAGTTTTGCTTCCAAGTTTGGAGACTATGTACAGGAAGATCCATCGTCTTTCCGCTTGTCATCCAACTTTTCTCTTTATCCTCAATTTATGTACTATATAAGGAGATCTCAGTTTATTGATGTCTTCAATAGTACACCCGATGAGACGGCTTTCTATAGGTTGATGTTAAATCGAGAGGGAGTGGTCGGTTCACTTATCATGATCCAACCCACATTGTTCGAATATTCATTTGATGGACCTCCTGTTCCCGTCCTCTTAGACGTGAGGTCTCTCTCTCCAGATGTCATTTTACTTTTCGACTCTTATTTCTACGTTGTTATACATTATGGTTCGAAAATTGCTCAGTGGAGGAAGCTCGGTTATGACAAGGATCCTAACCATGATAAATTTAAGAAAATTATTGGAAGCCCCGGAAATTGA 1299 41.57 MLGHRPLRSTGAAILAAVGLLEGCCFNSGSRIMVFTSGPATIGPGIVVDSDLSNSIRTHRDLINGNAPYYRKSCGFYNKVSKRLSDLSIVIDLFACSLDQVGISELKDLVESSGGFMMHGDSFENDQFRQCLRHIFSRDEEGNLNMYFDASIEIVTTKDVKICGALGPCVSLQKSNSLVSDTKIGEGGTYIWKMGTLTNKTCISFFFQVNQGENVQTGSAFFIQFITRYRNGNLGIRKRVTTAARRWVGANSPEIAAGFDQETAATVMARLAINRAETCHARDVIRWLDNVLVSFASKFGDYVQEDPSSFRLSSNFSLYPQFMYYIRRSQFIDVFNSTPDETAFYRLMLNREGVVGSLIMIQPTLFEYSFDGPPVPVLLDVRSLSPDVILLFDSYFYVVIHYGSKIAQWRKLGYDKDPNHDKFKKIIGSPGN 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8061949 8063247 - Bma019263.1 Bma04g00750 81119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00750 432 Pfam Sec23/Sec24 beta-sandwich domain 148 248 IPR012990 -
Bma04g00750 432 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 2 430 IPR037364 -
Bma04g00750 432 Gene3D von Willebrand factor, type A domain 2 136 IPR036465 -
Bma04g00750 432 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 363 430 IPR036180 -
Bma04g00750 432 Gene3D Severin 366 432 IPR029006 -
Bma04g00750 432 Pfam Sec23/Sec24 helical domain 260 356 IPR006900 GO:0006886|GO:0006888|GO:0030127
Bma04g00750 432 Pfam Sec23/Sec24 trunk domain 3 136 IPR006896 GO:0006886|GO:0006888|GO:0030127
Bma04g00750 432 SUPERFAMILY Helical domain of Sec23/24 260 362 IPR036175 GO:0006886|GO:0006888|GO:0030127
Bma04g00750 432 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 2 430 - -
Bma04g00750 432 Gene3D Sec23/Sec24 helical domain 249 365 - -
Bma04g00750 432 SUPERFAMILY beta-sandwich domain of Sec23/24 144 259 - -
Bma04g00750 432 Gene3D - 137 248 - -
Bma04g00750 432 SUPERFAMILY vWA-like 3 138 IPR036465 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00750 K14006 SEC23; protein transport protein SEC23 - vvi:100249428 735.717
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00750 Bma-Chr4:8061949 Bma06g01398 Bma-Chr6:50762146 9.76E-127 dispersed
Bma04g00750 Bma-Chr4:8061949 Bma02g01007 Bma-Chr2:51156994 1.78E-134 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g606 . Blo12g00355 Bda03g00850 . Bpe04g00804 . Bma04g00750 . . Cmo17g00185 . . . . . . . . . . . . . . Cla06g00627 Cam06g0666 Cec06g0670 Cco06g0675 Clacu06g0653 Cmu06g0646 Cre06g1414 . . . . . Csa02g01104 Chy05g00363 . . . . . . . . . Sed04g1952 . . . Cma17g00189 . Car17g00167 Cpe12g00162 . Bhi12g02260 Tan06g2465 Cmetu05g0430 . Hepe03g0247 . Lcy13g0328 . . . . . . . Lsi09g01277 . . Cme05g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011145 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00750 Bma_Chr04 FPKM 6.050343 4.783826 3.181837 4.141253 6.63607 5.850196 5.520075 6.22366 6.776744 5.484879