Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00760 ATGCAGGCCCCTAATTCTGAAGAAGACGCTACTGAATCATCCGAAAGTGTTGAAAATTGCCAAAGGCTGAGCTTCTCTAAGTTGTGTTTGGTTGGTGGTGTCGAATGTGACGTTGAGGATGATGCGTTTCTCGACGTTTCGGGGAAAATTTTGGAATTTCCCATGGCGAATAAGTTGGAGGATACGGTTAAAGGGCTGTATGTGTATAGAAACGTGTTTAATTTGATTCCGAAATCTCTCGGTGAATTAGGACAGTTGAAAACTTTGAAGTTTTTTGGCAATGAGATTAACTTGTTTCCATCTGAGTTGAACAACTTGGTCGGATTGGAACGTTTGCAGGTGAAACTAACTTCACCTGGGTTTGGTGGGGTACCCTTGCATATGATCAACGGTTTGAAGGAGCTTGAGCTTTCTAAAGTGCCTCCGCGGCCTTCTGCTTTTCCCATTCTTAATGAAATTACCAGTCTTAAGTGCTTGAAGAAGCTTTGTATCTGTCACTTCTCTATAAGATACATTCCTTCAGAAATTGGCTGCTTAAATAATTTGGAGTATCTAGATCTTTCCTTCAATAAAATCAAGACTTTGCCCACTGAAATTAGTTATTTGAATGAGTTGATATCATTGAAAGTTGCTCATAATAAATTGGTTCGAATACCATCAGCTTTGTCCTCCCTGCAAAAGTTGGAGAGCTTGGACCTATCAAATAATAGGTTGACTTCGTTGGGGTCTCTTGACCTTCCATCAATGCACAACCTTCAAAATCTTAATCTAAAGTTAGATGCTATTGTACTTTCTGCTCAGTCGCTGATGCGGCGTTTGAAGCAGATAAATGCCATAAACGATGATAAGAATCAATCTTCTGTTGATGATCTACTGATTGCTTCATTGCTTGCTCTGTTTGTATCAGATCATTTTGGCGGCAGTGATAAAAGTGCCATTGTAGAAAAGACAAGGAAAGCTGTGTCTGGTTCTAACTATGAAAATCCTTTCATTTGCTCATGTTCAACTGGAAACAGGGATTGGATGGACATGTCTACTGTACCGATTGGGAATGTGGTGGAAGACATAACTTTTTCAGATCTGTGCGAGAAATCTCTGCGATCTATTAAAGCAAGAAGAAATTCCATAATTATTCCTTTAGGGGAAGTACCATTTGGTGTGTGTAGACATAGAGCATTGCTGATGAAGTATCTATGTGACCGCATGGAGCCTCCAATATCTTGTGAGTTAGTGAGGGGTTACCTTGATTTTTCCCCTCATGCCTGGAATGTTATTCTAGTCAAGAGAGGCAATACATGGGTTCAAATGGTCGTCGATGCCTGTAACCCACATGATATACGAGAAGAGGCAGATCAGGAATATTTTTGCATGTATGTTCCTCTTAGTAGGTCTACAATTCCAATGTCTCCGGGAAAGATGCCTGGTCCTGGTTGTTCCTTTCCATCTCTATCTACTTGTGATAAAATTGAAAAATCAACATCCAGTTCAGTTGTAAAGTGCAAATTGGGATCCGTTGAAGCAGTAGCAAAGGTTCGTACTTTGGAAGTTTCTGTCTCTTCGATGGATCAGATTAGAAATTTCAAGTATAGCTGCCTATCAGAAGTGAGAATATTGGGTGCTTTGAAACACTCTTGCATAGTAGAGATGTATGGACATCAGATATCTTCGAAGTGGATTTCTTCTGTGGAAGGAGAACCGGAACATCGTCTCCTACAGTCTTCTATATTTTTAGAATACATAAAAGGAGGATCCTTGAAGAGATACATTGAGAAGTTGTCTGAGGTTGGAGAGAAGAGTGTTTCAGTGAACTTAGTATTATGTATTGCTAGAGATGTGACATGTGCTTTAGCAGCCATGCATTCGAGACACATCATACATCGTGACATAAAAAGCGATAACATATTGATTGATTTGGATACAAAGAGGGTTGATGGTTCTCCTTTAGTGAAGCTCTGTGATTTCGACAGAGCTGTCCCTCTTCATTCTTCCTTGCATACATGCTGCATTGCTCATTTTGGGGTGCCTCCACCGGATGTTTGTGTTGGAGAAGTGGATATTTGGTCATTTGGATGCCTACTATTGGAACTATTGACATTACAAATCCCATACTCGGAATTATCTGAGTTACAGTTTTGTGACCAACTTAAGCTGGGAAAAGGCCCACGATTGACCGAGGAGCTAGAAGCATTGTTAGACAACACATCTGCTACAGACCAAAACAAAAAATCTGAAGCAACGTCAAATGATCTCAAGTTCCTTATCGATTTATTCCATCAATGTACTCAGGAGAATCCTGGCGACCGACCAACGGCTGTCAATCTTTACGAATCATTGGTGGCAAGAAGTAGAACAACCGATCTTTCCAGCGGAAGAAGTCTCTAA 2382 40.47 MQAPNSEEDATESSESVENCQRLSFSKLCLVGGVECDVEDDAFLDVSGKILEFPMANKLEDTVKGLYVYRNVFNLIPKSLGELGQLKTLKFFGNEINLFPSELNNLVGLERLQVKLTSPGFGGVPLHMINGLKELELSKVPPRPSAFPILNEITSLKCLKKLCICHFSIRYIPSEIGCLNNLEYLDLSFNKIKTLPTEISYLNELISLKVAHNKLVRIPSALSSLQKLESLDLSNNRLTSLGSLDLPSMHNLQNLNLKLDAIVLSAQSLMRRLKQINAINDDKNQSSVDDLLIASLLALFVSDHFGGSDKSAIVEKTRKAVSGSNYENPFICSCSTGNRDWMDMSTVPIGNVVEDITFSDLCEKSLRSIKARRNSIIIPLGEVPFGVCRHRALLMKYLCDRMEPPISCELVRGYLDFSPHAWNVILVKRGNTWVQMVVDACNPHDIREEADQEYFCMYVPLSRSTIPMSPGKMPGPGCSFPSLSTCDKIEKSTSSSVVKCKLGSVEAVAKVRTLEVSVSSMDQIRNFKYSCLSEVRILGALKHSCIVEMYGHQISSKWISSVEGEPEHRLLQSSIFLEYIKGGSLKRYIEKLSEVGEKSVSVNLVLCIARDVTCALAAMHSRHIIHRDIKSDNILIDLDTKRVDGSPLVKLCDFDRAVPLHSSLHTCCIAHFGVPPPDVCVGEVDIWSFGCLLLELLTLQIPYSELSELQFCDQLKLGKGPRLTEELEALLDNTSATDQNKKSEATSNDLKFLIDLFHQCTQENPGDRPTAVNLYESLVARSRTTDLSSGRSL 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8176028 8182587 - Bma019278.1 Bma04g00760 81129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00760 793 ProSiteProfiles Protein kinase domain profile. 483 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00760 793 Gene3D Ribonuclease Inhibitor 10 292 IPR032675 -
Bma04g00760 793 SMART serkin_6 483 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00760 793 SUPERFAMILY Protein kinase-like (PK-like) 481 778 IPR011009 -
Bma04g00760 793 SMART LRR_bac_2 179 198 - -
Bma04g00760 793 SMART LRR_bac_2 202 221 - -
Bma04g00760 793 SMART LRR_bac_2 225 244 - -
Bma04g00760 793 SUPERFAMILY L domain-like 65 259 - -
Bma04g00760 793 SMART LRR_typ_2 225 248 IPR003591 -
Bma04g00760 793 SMART LRR_typ_2 179 202 IPR003591 -
Bma04g00760 793 SMART LRR_typ_2 83 106 IPR003591 -
Bma04g00760 793 ProSiteProfiles Leucine-rich repeat profile. 227 248 IPR001611 GO:0005515
Bma04g00760 793 Pfam Ethylene-responsive protein kinase Le-CTR1 356 439 - -
Bma04g00760 793 Pfam Protein kinase domain 493 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00760 793 SMART LRR_sd22_2 179 204 - -
Bma04g00760 793 SMART LRR_sd22_2 225 246 - -
Bma04g00760 793 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 64 258 - -
Bma04g00760 793 ProSiteProfiles Leucine-rich repeat profile. 181 202 IPR001611 GO:0005515
Bma04g00760 793 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 259 781 - -
Bma04g00760 793 Gene3D Transferase(Phosphotransferase) domain 1 480 789 - -
Bma04g00760 793 PRINTS Leucine-rich repeat signature 182 195 - -
Bma04g00760 793 PRINTS Leucine-rich repeat signature 225 238 - -
Bma04g00760 793 PANTHER BNAC08G43810D PROTEIN 64 258 - -
Bma04g00760 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Bma04g00760 793 PANTHER BNAC08G43810D PROTEIN 259 781 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00760 - - - vvi:100249467 727.243
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g00760 Bma05g01090 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00760 Bma-Chr4:8176028 Bma01g02638 Bma-Chr1:83891178 5.86E-23 dispersed
Bma04g00760 Bma-Chr4:8176028 Bma05g01090 Bma-Chr5:49624458 2.74E-137 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66454 PF00069 Pkinase 1.80E-29 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00760 Bma_Chr04 FPKM 35.009834 33.85907 20.356272 17.546719 25.127697 28.736721 25.235903 9.473 10.600573 9.594228