Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00774 ATGGACAGCCCCGATAGAACCCAGCTCGGAGCTGCTTCAGTTTCTAAAATTGAGAATTCTCCTGTTTTCAACTACATTAGTACTCTTTCTCCTATCAAGCCCTTGAAGGCCATACACACTAATCATGCGTTCAACTCGCTTAGTCTGAGAGCCATTACATCTGTTTTTTCATCACCACATTCCAATTCTGCTAGAGAATCTAGTCTCTTACGAGGGCACAGTTATGCAGATAGATCAAAACCCACTTCTCCTTCGAATGGGAATAAATTTTGCACAAACCGATGTGTATATGCAAGTGTGGATGAACTGTATAGTAACTCGGCTGTAATACACGAACATTTCAATACTGGTGTTTCTGCTATCAATGCATCTGATGAACCGCCGCGCAGATATTCAAAATCTACAATTGATGCTTCAAAAATGACGGCTTACACGTGTGGCAGCCCTGGATATAGTCCAAATAGTAATCATTTTGGTATTCAATCAGATTGTATGTCAGAATCATGTTTACTTGTACCTTATGTCCAAGAGGACTCTAAAAAAGGTTCATATGAAAGGGAAAAGAATTTAGTCTGCCACATTGAAGAGAGAAAAGAAGGAACCAGAGATGGTTTGGAAAGTTTGATTTCTGATACTGGCAGCCCATTGATTTTTACTTCTCCTGATAGTTCAGAGGCTATGAGATTGATTCAGGATTCACTAGACCCAAAGACAAAATTTTCTAGAGGTCTTATGTCACAGTTAGCATCCAATGGGCAAAATTATATGCATGAACTGCCAAGTGCTGATCACTGGCCAGATCATTCTTCTCTACTCAAAGACATGACCGAGCTAAACAAAATAGTGCCGACTCTTTATGATTATGCATATTCTAAAAGAAGTATGCATATCACAGCTGAGGAAGAAATATATAATGAGGCCGCATCCAGTTTGCATAATGCTACATGGAGGCGTGGTCTAGATTTTGAGATGGCAGGAGATTGTCGAAAAGGTACAGAAGATGGTAAAAATTCTAGTTCTTCTATTCTATGTCAATCAGATGAGAAGTTTATTGCGAATAATAAACAAGTAGTACATCCTACGTCTTCTGGTCACTTGTCTTTGTGCATTTTACCCGGAATTGGATTGCATTTGAATGCTCTGGCAAAGAATTTTAAGGATTGCAAAAACGCCAGTGAAGAAATTTTGTCTTCTGGAAGACAATTAACCCTTCCCTGCACCACCGGCCAATCACATATCTCCTCAACTTCTCATGAACCTCTCTTCACTTCAGCTGATTCTGAAAGAGAGATGGATCCTCTTGATAATAGGTGGATTAAAATGGAGGAAGACGCTCCTCAAGCATCTCACAATGTACTCAATGAAGAGTTCTATTGGGATAGCCCCAAAAGGAAGAGGCATGTTCAATGCCTTATTTTGTTTTACGCTAGTTCTAGCAGGCTTAGGTCGGACCTTGCTGGAGAAAATGAGACATGCAAAAGATGCAACTGTAAGAAGTCAAAGTGTTTGAAACTTTACTGTGAATGCTTTGCTTCTGGATTGTACTGTATTGAGCCATGCTCATGTCAAGAATGCTTTAACAAACCTGATCATCAAGAAACTGTTCTTGCAACTCGTAAATTGATCGAGTCTCGAAATCCGCTAGCCTTTGCTCCTAGAGTGATTTGGAGCTCTGATCATGCGGCTGAACTTGGGGACGTTCCTCTTAAAACCCCAGCTTCATCAAGACATAAAACAGGATGCAATTGCAAGAAATCAAGTTGCTTGAAGAAATATTGCGAATGCTTTCAGGGTGGGGTTGGATGCTCGAGTAGCTGCAGATGTGAAGGGTGTAAAAATGCATTTGGTAAAAAAGATGGAATCGAAGAAGAAACAAAATCATTCCAAAAGAACTTTTTGGGTAAATCTTTAACTTGCACTGAGATTCAGAACCGTGGAGAACAAGATTTAGGCTCTGCACTTCCAATACGAACCCCGTTGCTACCATGCAGGCCATTCACGTTACAAAATCAAACATCCTGCTCTTCTTTCATTGATGTGGGAACACCTTCTGCATTGTGTGCTGAACGAAAACTCGAAAAGCCGAATATTCTCAGATCTCAACCCAAATTTGATAAGGACGAAAAACTGGTGTTGGAAGGTGTCGTACCAGTTTACAGAGATTGTTCCCCAAGAACCAGCTTCAGGACTGCTTCTCCAAACGGTAAGAGAGTGTCTCCCCTTCATTGCGATCCGGCTACTCGAATAGGTCGAAAGTTGATATTACGATCAATTCCTTCATTCCCGTCTCTCTCTCCTCAATGA 2304 40.8 MDSPDRTQLGAASVSKIENSPVFNYISTLSPIKPLKAIHTNHAFNSLSLRAITSVFSSPHSNSARESSLLRGHSYADRSKPTSPSNGNKFCTNRCVYASVDELYSNSAVIHEHFNTGVSAINASDEPPRRYSKSTIDASKMTAYTCGSPGYSPNSNHFGIQSDCMSESCLLVPYVQEDSKKGSYEREKNLVCHIEERKEGTRDGLESLISDTGSPLIFTSPDSSEAMRLIQDSLDPKTKFSRGLMSQLASNGQNYMHELPSADHWPDHSSLLKDMTELNKIVPTLYDYAYSKRSMHITAEEEIYNEAASSLHNATWRRGLDFEMAGDCRKGTEDGKNSSSSILCQSDEKFIANNKQVVHPTSSGHLSLCILPGIGLHLNALAKNFKDCKNASEEILSSGRQLTLPCTTGQSHISSTSHEPLFTSADSEREMDPLDNRWIKMEEDAPQASHNVLNEEFYWDSPKRKRHVQCLILFYASSSRLRSDLAGENETCKRCNCKKSKCLKLYCECFASGLYCIEPCSCQECFNKPDHQETVLATRKLIESRNPLAFAPRVIWSSDHAAELGDVPLKTPASSRHKTGCNCKKSSCLKKYCECFQGGVGCSSSCRCEGCKNAFGKKDGIEEETKSFQKNFLGKSLTCTEIQNRGEQDLGSALPIRTPLLPCRPFTLQNQTSCSSFIDVGTPSALCAERKLEKPNILRSQPKFDKDEKLVLEGVVPVYRDCSPRTSFRTASPNGKRVSPLHCDPATRIGRKLILRSIPSFPSLSPQ 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8460429 8465572 + Bma019298.1 Bma04g00774 81143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00774 767 ProSiteProfiles CRC domain profile. 491 616 IPR005172 -
Bma04g00774 767 SMART CXC_2 576 617 IPR033467 -
Bma04g00774 767 SMART CXC_2 490 531 IPR033467 -
Bma04g00774 767 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 766 - -
Bma04g00774 767 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 766 IPR044522 GO:0003700
Bma04g00774 767 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 493 528 IPR005172 -
Bma04g00774 767 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 579 614 IPR005172 -
Bma04g00774 767 MobiDBLite consensus disorder prediction 58 85 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00774 - - - qsu:112021049 661.373
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g00774 Bma06g01566 CCT
Bma04g00774 Bma06g01566 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00192 Bma-Chr1:1702579 Bma04g00774 Bma-Chr4:8460429 1.38E-28 transposed
Bma04g00774 Bma-Chr4:8460429 Bma06g01566 Bma-Chr6:51941487 5.95E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g539 . Blo12g00335 Bda03g00875 . . Bpe14g01204 Bma04g00774 . . . Cma06g01388 Cma14g01734 Car06g01197 Car14g01564 Sed02g1334 Cpe08g00275 Cpe03g01455 Bhi01g00774 Tan10g0801 Cmetu07g2311 . Hepe05g1577 . Lcy11g1571 . . . . . . . . Cone15ag0860 Cone7ag0270 Cone4ag0261 Lsi05g01627 . . Cme06g00586 Blo02g00527 Blo07g00229 Bda11g00591 Bda13g00106 . Bpe13g00593 . Bma06g01566 . Cmo06g01394 Cmo14g01773 . . . . . Cpe17g00155 . . . . . . . Cla05g00518 Cam05g0569 Cec05g0581 Cco05g0579 Clacu05g0566 Cmu05g0537 Cre05g0606 . Csa03g01301 Chy06g00555 Cme05g00473
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019329 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57192 PF03638 TCR 4.50E-12 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00774 Bma_Chr04 FPKM 13.882032 15.884625 37.211479 36.812508 9.700222 7.460461 8.744931 14.827359 15.227242 13.158319