Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00775 ATGGAGTGCGTGTTTGGACTAGTAGGAAATGGATTCGCCGTCGTAGTGGCGGATACATCGGCTGTTCATAGCATTTTGGTCCACAAATCTAACGAGGACAAGATCATGGTTCTCGACGCTCACAAGCTCTTCGCTGCTAGTGGCGAGCCCGGAGATAGGGTTCAGTTCACTGAGTATATACAGAAAAACGTGGCGTTGTATCAGTTTCGTAATGGGATTCCCTTGACTACCGCAGCTGCGGCGAACTTCACAAGGGGCGAGCTCGCCACTGCCTTGAGGAAGAATCCATACTCTGTGAACATCCTGTTGGCTGGTTATGACAAAGAAACAGGCCCATCCCTCGATGACATGAGAGCTTATAACATGGAAGGTGTTTTCATGAAAAAGCGTAACTACTTTTTATCCTTAGAAGTTCCTGGTCTAGCCGAGAGAAGACCTTCTCTTGTCCATGGAGATTATATTCTCGCCACCCTGTCCTCAAGTGCAAATGACCAATCAAGTTCATATCAGGGTTATATTCATCATGTTGAGGCTGATGAAATACACCTGAAGTTTAATCCGGATTTTCATTGTCATCATAGAGACGACAATTTTTACAATGTCCAGTTCACATACAATCGAATTAACATGAGAAGGTTATATCAGGCTGTTGAGGCTGCCCAAAGTTTGGCTCCAGAATTTCTATTTCCATCATCCGAAAGGAGACAAATTAAAAAAACACGATTTCAACCAATATCATGTAATCTTAATGAGGAACAGGTGAGCTCAATTGAAATGATACTTGGCTGCAAAGGTGCTCCACCTTATTTAATTCATGGACCTCCTGGAACTGGGAAGACTTTAACGTTAGTCGAAGCTATCCTTCAGCTCTATACAACGCGACAGAATGCCCGGGTGCTTATTTGTGCACCTTCGAATAGTGCAGCCGACCATATTCTGGAGATACTTTTGAATGAAAAGAAGATTGAAATACGAGACAATGACATATTTAGGCTCAATGCTACGACTCGTCCGTATGAGGATGTCAACCCTGATCATCTTCGGTTTTGTTTCTTAAATGAGCGTATCTTCACATCCCCTCCGCTTAGAGCTCTCTTGCGCTACAGAATTGTTATTTCAACCTACATGAGTGCCTCTCTCCTTTATGCAGAAGGAATGCGGAGGGGTCATTTTTCTCATCTTTTCTTGGACGAATCTGGCCAAGCTTCAGAGGCCGAAACTATGATCCCTATAGCTAACCTGTGTCTCAGAACTACAGTTGTCGTTCTTGCTGGAGATCCAAAGCAGTTAGGTCCAGTGATATACTCCAAAGAAGCAAATGCTTTTGGGTTAGGAAAATCATATTTAGAGAGGTTGTTTGCATGTGAATTCTATGAATATGGGGATGAAAATTACTTGACAAAGTTGATAAGAAACTACAGATGTCATCCGGCTATACTTCATCTCCCTTCAAATTTGTTCTATGGTGGGGAATTACTTGCGTGTAAGGATGTGGCAAATTCTCTCTCGACTGAAGTTGATATCATGAAACTCCTTCCCAACAAGGAGTTTCCAGTTCTTTTCCTTGGTATCCAAGGCTGTGATGAGAGAGAGGGAAATAACCCTTCATGGTTTAATAGGATCGAGGCAAGCAAGGTTGTGGAGATTGTCAAAAAGTTGACAGCGACTGGAAATTTAGGTGAGGAAAGTATTGGAGTAATAACGCCGTATCGGCAGCAAGTTCTGAAACTGAAAAGAACTTTTGAAAATTTGGATATGCTTGATATTAAGATTGGTAGTGTTGAACAGTTTCAAGGACAGGAGAAGCAAGTTATCATCGTTTCTACCGTTCGATCAACGGTCAAACACAATGAGTTTGATCGAACGTACTGTTTGGGTTTCTTGAGCAATCCAAGAAGGTTTAACGTGGCCGTTACCAGAGCAATATCTCTTCTAGTCATGATCGGGAATCCACATATTATCAATCGGGATGCTTATTGGAACAAACTGTTGTGGTATTGTGTCGACAACAACTCCTATCAGGGTTGTCCACTCCCCGAAAGAGAGGATCATCTTATCGAGACCAATGAGAAAAAAGAAGAGTGGAACCACGATGGGGAAGGCACATGGAACGACAATGGAGGAGACTGGAATGCAAAAGCAGGAGAAAACTGTAGAGGTAGCAATGCTGTGGCTGAGATTCCCAAGCCAGTTACTGATGAAGCAGAATGGTCTGATGGTTGGAAGTGA 2229 42.89 MECVFGLVGNGFAVVVADTSAVHSILVHKSNEDKIMVLDAHKLFAASGEPGDRVQFTEYIQKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYSVNILLAGYDKETGPSLDDMRAYNMEGVFMKKRNYFLSLEVPGLAERRPSLVHGDYILATLSSSANDQSSSYQGYIHHVEADEIHLKFNPDFHCHHRDDNFYNVQFTYNRINMRRLYQAVEAAQSLAPEFLFPSSERRQIKKTRFQPISCNLNEEQVSSIEMILGCKGAPPYLIHGPPGTGKTLTLVEAILQLYTTRQNARVLICAPSNSAADHILEILLNEKKIEIRDNDIFRLNATTRPYEDVNPDHLRFCFLNERIFTSPPLRALLRYRIVISTYMSASLLYAEGMRRGHFSHLFLDESGQASEAETMIPIANLCLRTTVVVLAGDPKQLGPVIYSKEANAFGLGKSYLERLFACEFYEYGDENYLTKLIRNYRCHPAILHLPSNLFYGGELLACKDVANSLSTEVDIMKLLPNKEFPVLFLGIQGCDEREGNNPSWFNRIEASKVVEIVKKLTATGNLGEESIGVITPYRQQVLKLKRTFENLDMLDIKIGSVEQFQGQEKQVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAVTRAISLLVMIGNPHIINRDAYWNKLLWYCVDNNSYQGCPLPEREDHLIETNEKKEEWNHDGEGTWNDNGGDWNAKAGENCRGSNAVAEIPKPVTDEAEWSDGWK 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8468866 8476068 + Bma019299.2 Bma04g00775 81144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00775 742 CDD SF1_C_Upf1 475 667 IPR041679 -
Bma04g00775 742 Pfam AAA domain 365 437 IPR041677 GO:0004386
Bma04g00775 742 Pfam AAA domain 249 344 IPR041677 GO:0004386
Bma04g00775 742 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 133 IPR029055 -
Bma04g00775 742 Gene3D - 473 684 IPR027417 -
Bma04g00775 742 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 114 IPR029055 -
Bma04g00775 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 664 IPR027417 -
Bma04g00775 742 PANTHER RNA HELICASE SDE3-RELATED 115 702 - -
Bma04g00775 742 Pfam Proteasome subunit 3 114 IPR001353 GO:0005839|GO:0051603
Bma04g00775 742 Gene3D - 152 460 IPR027417 -
Bma04g00775 742 Pfam AAA domain 445 651 IPR041679 -
Bma04g00775 742 PANTHER DNA2/NAM7 HELICASE FAMILY 115 702 IPR045055 -
Bma04g00775 742 MobiDBLite consensus disorder prediction 694 715 - -
Bma04g00775 742 CDD DEXXQc_Helz-like 249 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00775 K18422 MOV10; helicase MOV-10 [EC:3.6.4.13] - csv:101209925 920.228
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00775 Bma-Chr4:8468866 Bma07g00979 Bma-Chr7:37745529 3.22E-51 dispersed
Bma04g00775 Bma-Chr4:8468866 Bma05g01103 Bma-Chr5:49785649 2.48E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g530 . Blo12g00334 Bda03g00877 . Bpe04g00822 . Bma04g00775 . Cmo08g01110 . . . . . . . . . . . . . . . Cla06g00598 Cam06g0637 Cec06g0640 Cco06g0643 Clacu06g0623 Cmu06g0616 Cre06g1384 Cone14ag0862 . . . . . . . . . . . . . . . . . . Cma08g01136 . Car08g01018 . . Cpe17g00154 . . . . . . . . . . . . . . Lsi09g01306 . . Cme01g01579
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009068 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00775 Bma_Chr04 FPKM 1.449679 1.68243 2.020157 1.463525 3.030892 2.736486 3.715224 4.231651 4.749086 4.842408