Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00785 ATGGAAGAGACCGTGAGATCTGGTGGCTCTTCTGGGGTAGTGGTGAAGAAGAGGAACACTTCGGGTTTTCTAATTGTTAAAAAGAAAGGGGATGGCGTGGGAGGCTCGAGTTCTGGAGTGGCGTTGAATTCCAAGAAGGAGAAGAAGAGGCGACGGTTGCCCGTTAGTCATTCCGAATCAAGTGATGAGCAAATAGTGGCTCCTCGAAGACAAGTTGGTCGAAAAAGCCTTCAGGTATGTAATGGTTTAAATGCTTTCGAAAAAAGTAGTGGGGAGGAAGATGAAATTGAAAGAGTGAAGAATAGTTTGGAATATAGTACGGGTAATGGTGATAGCATGACCAGGAGGAATAACAAGAGCGAGACTGAAAGAAATGGAAGTAGGTTAGGTGTTTTCGACTTCAATGAGTATGATGGAGTTGATGGAGAGAAGTTTCGGAGTCAATTTAATAATTTTGGTGCGGAGGTTGGGGAAAAAAGACTTTCGGGATCAATGCACTTGTCTCGAAATGGCGATGAGAGGGTATTTAAAGCTGGTTCTAGTAGACATATGATTGATAAGAGAACAGAAAATTATATTGATTGTTCTGGTGGCTTTAATAGAGATAGTCGTGCTAGTAGGAGTAACCATAAAGATGGAGCACAGGTTCCCGTATCATATTTGAGAGACAAATTCACGACTCCCTCTGATGAGCCAATCAGGGTTCAAGGAAAAAATGGCGTGTTGAAGGTTATGGTAAATAAAAAGAGAAGTATGGATGTTCTTGATATTAATGATCATGGGAAATGTGAGGACAATGACAAGAGTTCAAATGAAGATGCTCCAAAAAGAAATGTTACCATCACTCCGATGGTTCATTCAGAAATAAAGTACTTCAAAAGACGAAGTCGGTTAATTACCAGCTCCGAGAAGGATCAAACAAATTCGAGGACATCATTTCCTACGAACAAGGGTAAAGGCAGTGGTTGGGATTCAGATGATAGTAACTTTTCATTGAATCCTGAATCGGAGCCTGCAAAAGCTCGTAAAACTGCAAAAATGGAAAGCTGTGAAGTTGAAAAGACTCCAAAAAATGCAATAAAAGAAGGAAAAGTTAAACGTGGTAGTGGCACTGAAAAGCAAAAACTCCGTGAACAGATCAGGGGAATGCTCATCAATGCTGGATGGACTATTGATTACAGGCCTCGGAGGAACAGAGACTATCTAGATGCTGTGTATATTAATCCTAGTGGAACAGCTTATTGGTCAATTATTAAAGCTTATGATGCACTTCAAAAGCAATCAAATGGAGAGGATAATGAGGTTAGACCTAGTGATGACTGTTCTTCATTCATGCCAATAGCAGATGAGGTAATAAGCCAATTGACGAGAAACACTCGGAAGAAGATTGAGAAAGAATTTAAAAAGAAGCAAAGAGACTTCAAGAATAGTGAAAAGGTCAAAGGAAAGGGTGGAAAAAAATCTGCCAGTGGTAAATATGATGTGGAGAGCATGGACAGCAACGAAGAGAAGCTTAGCTCATTCATTAAGCATGGCAGTAAATCGCAGAAGAATAGAGTAAATGAAAATGATGTTTCTACAGTGAACTTGAAAGGTCAGAATTCTAGTAATAACTTGCACGATAATGTTGAAATATCATCTTTTGGATCTAACTCCCGCATTCTTCAAGGAAGAAAAAGAAGAAAACTGGGGTTGTTGGTTCGCAGTTCCAACAAGGGACCAAATTCAGATGATGGCTTTGTTCCTTATACTGGAAAAAGAACACTGCTTTCCTGGCTGATTGACTCTGAAACTGTGCATTTAAGCCAAAAAGTTCGGTACATGAACCGCAGACAAACAAGAGTAATGCTAGAGGGCTGGGTTACAAGAGATGGTATTCATTGTAGTTGCTGTAGTAAAATTCTTACTCTTTCAAAGTTTGAGCTACATGCTGGTAGTAAACTTCGTCAGCCTTTGCAAAACATAGTTTTGGAATCCGGGGTCTCTCTTTTGCAATGTCAAATAGATGCATGGAATAGACAAGAGGAATCCAAACGTCTCAGTTTCTACTCGATTGAAATTGATGGTGATGATCCAAATGATGATACATGTGGCATTTGTGGAGATGGTGGGGATTTAATATGTTGTGATGGTTGTCCATCAACTTTTCATCAAGGCTGTTTAGACATACAGATTCCTGCGGGTGATTGGCATTGTCCAAATTGTACTTGCAAATTTTGTGGCGGTGGAGATGATTTTGGGCTAGATCATTCTTCTGCTACTGGGCTTAGTGTTTGCACGATGTGTGAGAAAAAATATCACATATCATGCATCCAGGATATGGTTTCTGGTACTTGTCTCCGTGGTTCACAGATGCCCTTTTGTGAGCAGAAATGTCGAGAGCTCTTTGGACAGTTGCAAAAACATCTTGGCGTCAAGCATGATCTAGATGGAGGATTTTCATGGTCACTTATTCGTAGAATGGACGAAGACTGCGATGCATCAGTTCATGGACTTCTTCAGCGTGTGGAATGCAATTCTAAGCTAGCTGTTGCGTTAACAGTTATGGATGAATGCTTTTTACCTGTTGTCGACAGGAGGAGCGGGATCAACCTAATCCATAATGTTCTGTATAATTGTGGATCAAATTTTAATCGGCTCAATTATAGTGGCTTTTACTCTGCTATTTTGGAGAGGGGTGATGAAATTATCTCTGTCGCATCTGTCAGGTTCCACGGGACAAAGTTAGTGGAGATGCCCTATATAGGCACTCGACATATTTATAGACGTCAAGGAATGTGCCGTCGGCTTTTTTGTGCAATTGAAGCAGCCCTCCGCTCATTTAAGGTTGAAAAACTAATTATTCCTGCAATTTCTGAACTCATGCACACATGGACTGTGGTTTTTGGTTTTACTCCTCTAGAAGAGTCGCTTAAGCAAGAAATGAGGTCAATGAACATGTTAGTGTTCCCGGGTACGGATATGTTACAGAAGGAGCTTATGGGAAAAGAATCGATGGACAAGAATGTCGCTTCGAGCTCAGGTGGAAAAGCTCTGGGAAGTAATGACAAGCAGGACGCAAGGTCTCCTGTGCCAAGGAAAATGGAAACTGAATTATCACCCAAGAAGGATACTGGTTGTGATGATACCGATCTCAATCACTTGAATGGGGTAACAGATGAAATAACTGCTGTAAATTCTAGTGCTGAAAATCTGGTTGTTTCTGCAGTTGTGAGCAATCATTTGGATGCTCCTCACAACGTTCAAAGTTCAGTGTTGATTGAGGGGGGTGTAAATTTAGACTCTCATTCTGAGGATAAATTTCTTTTATCTGCTTCCGAGTTGAAATTATCTGCATCTGATATGGATCATAGATCACCTGCAATGGAAACTAAGCCGGCATCAGATTCTGCAATGGCAGATTGCAAGTCTTCCATTCAATTCCTTGATGTTTCCTTAAATGATAACTCCTTAACAAGTGATGCTTCAGAAGCTTCCCGTGAGGTTGATATTGAACTATCAATGGAAGGAAATGAAGTACCAACTGTTGGCAGAATCGACATGAAATCTCCTTCTCCCTCTACAGATAACAATGCGCATGAGGACAAAAATGAGCCTTCCTCAGAAAATGATGGAAACTCTTCTAGTAGTTGGGAGGTACAGGACACCCACAAGATCGATGCTAAAGTGGAGGATCTTGAATCTACTTGGCCTGTAGAAAAGTTTTCTGAGAATCATGTTGATGAACTCGGTGAAAATCCAGATGCTTCTGCTGTCAGTTTCAACTGGGCTAGTGAGATTCCAATTGAAATTAAACCTGTTTTGAATAATAAAACTGCAACTGAGGTAGATGGCATGTTACTTGTTTCTTCAGAAGCTGCTTCTGATGCTCTGAATTGGAACGGGAAATGTCTTGCTGCATCTGGTGAAAGTTGTGGTACTGATGAACTGGAAAAATAG 3939 40.67 MEETVRSGGSSGVVVKKRNTSGFLIVKKKGDGVGGSSSGVALNSKKEKKRRRLPVSHSESSDEQIVAPRRQVGRKSLQVCNGLNAFEKSSGEEDEIERVKNSLEYSTGNGDSMTRRNNKSETERNGSRLGVFDFNEYDGVDGEKFRSQFNNFGAEVGEKRLSGSMHLSRNGDERVFKAGSSRHMIDKRTENYIDCSGGFNRDSRASRSNHKDGAQVPVSYLRDKFTTPSDEPIRVQGKNGVLKVMVNKKRSMDVLDINDHGKCEDNDKSSNEDAPKRNVTITPMVHSEIKYFKRRSRLITSSEKDQTNSRTSFPTNKGKGSGWDSDDSNFSLNPESEPAKARKTAKMESCEVEKTPKNAIKEGKVKRGSGTEKQKLREQIRGMLINAGWTIDYRPRRNRDYLDAVYINPSGTAYWSIIKAYDALQKQSNGEDNEVRPSDDCSSFMPIADEVISQLTRNTRKKIEKEFKKKQRDFKNSEKVKGKGGKKSASGKYDVESMDSNEEKLSSFIKHGSKSQKNRVNENDVSTVNLKGQNSSNNLHDNVEISSFGSNSRILQGRKRRKLGLLVRSSNKGPNSDDGFVPYTGKRTLLSWLIDSETVHLSQKVRYMNRRQTRVMLEGWVTRDGIHCSCCSKILTLSKFELHAGSKLRQPLQNIVLESGVSLLQCQIDAWNRQEESKRLSFYSIEIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQGCLDIQIPAGDWHCPNCTCKFCGGGDDFGLDHSSATGLSVCTMCEKKYHISCIQDMVSGTCLRGSQMPFCEQKCRELFGQLQKHLGVKHDLDGGFSWSLIRRMDEDCDASVHGLLQRVECNSKLAVALTVMDECFLPVVDRRSGINLIHNVLYNCGSNFNRLNYSGFYSAILERGDEIISVASVRFHGTKLVEMPYIGTRHIYRRQGMCRRLFCAIEAALRSFKVEKLIIPAISELMHTWTVVFGFTPLEESLKQEMRSMNMLVFPGTDMLQKELMGKESMDKNVASSSGGKALGSNDKQDARSPVPRKMETELSPKKDTGCDDTDLNHLNGVTDEITAVNSSAENLVVSAVVSNHLDAPHNVQSSVLIEGGVNLDSHSEDKFLLSASELKLSASDMDHRSPAMETKPASDSAMADCKSSIQFLDVSLNDNSLTSDASEASREVDIELSMEGNEVPTVGRIDMKSPSPSTDNNAHEDKNEPSSENDGNSSSSWEVQDTHKIDAKVEDLESTWPVEKFSENHVDELGENPDASAVSFNWASEIPIEIKPVLNNKTATEVDGMLLVSSEAASDALNWNGKCLAASGESCGTDELEK 1312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8517989 8525548 - Bma019308.1 Bma04g00785 81154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00785 1312 MobiDBLite consensus disorder prediction 89 125 - -
Bma04g00785 1312 MobiDBLite consensus disorder prediction 1020 1043 - -
Bma04g00785 1312 MobiDBLite consensus disorder prediction 339 354 - -
Bma04g00785 1312 MobiDBLite consensus disorder prediction 1154 1215 - -
Bma04g00785 1312 MobiDBLite consensus disorder prediction 258 274 - -
Bma04g00785 1312 MobiDBLite consensus disorder prediction 302 335 - -
Bma04g00785 1312 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1223 - -
Bma04g00785 1312 MobiDBLite consensus disorder prediction 27 70 - -
Bma04g00785 1312 Pfam PHD-finger 697 738 IPR019787 -
Bma04g00785 1312 SUPERFAMILY FYVE/PHD zinc finger 677 737 IPR011011 -
Bma04g00785 1312 ProSitePatterns Zinc finger PHD-type signature. 697 735 IPR019786 -
Bma04g00785 1312 MobiDBLite consensus disorder prediction 258 281 - -
Bma04g00785 1312 MobiDBLite consensus disorder prediction 466 498 - -
Bma04g00785 1312 Coils Coil 460 480 - -
Bma04g00785 1312 Pfam Tify domain binding domain 619 669 IPR032308 -
Bma04g00785 1312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 685 792 IPR013083 -
Bma04g00785 1312 MobiDBLite consensus disorder prediction 998 1045 - -
Bma04g00785 1312 CDD PHD2_CHD_II 697 735 - -
Bma04g00785 1312 ProSiteProfiles Zinc finger PHD-type profile. 694 738 IPR019787 -
Bma04g00785 1312 MobiDBLite consensus disorder prediction 299 354 - -
Bma04g00785 1312 PANTHER PHD FINGER FAMILY PROTEIN 1 1223 - -
Bma04g00785 1312 SMART PHD_3 696 736 IPR001965 -
Bma04g00785 1312 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 880 969 IPR016181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00785 - - - cmo:103489665 1210.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00785 Bma-Chr4:8517989 Bma14g00245 Bma-Chr14:2934867 5.46E-112 dispersed
Bma07g01384 Bma-Chr7:49605521 Bma04g00785 Bma-Chr4:8517989 1.20E-10 dispersed
Bma04g00785 Bma-Chr4:8517989 Bma10g00055 Bma-Chr10:559346 1.47E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57194 PF16135 TDBD 5.20E-21 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00785 Bma_Chr04 FPKM 43.012821 50.167671 133.069077 138.706329 80.769821 53.421818 78.046265 45.780582 42.112534 50.074596