Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00788 ATGAGTCTTGATTTTATCCTTGTTCTATTTTTTCTTCAGTACTTATTCTCACCCACCATTTCGCTTCACCCCCTAGACCCTCTCAGCCCTGATGAACTAAACAAAGTTAGCCTCATTATCCACAGTTCCCATCTTGCTGCTTCTCTTCCAAATCTGACTTTTCACTTTGTTGATCTTCAAGAGCCAGATAAACCTGACGTTTTCAGGTGGCTCCGGAGAGACGGTGGGGAGCAGAGGTTCGTCCCTCCCCGCCGAGCCAAAGCTGTGGTTAGAGCCCTCGGTAAGACACACGAGCTCGTCGTCGACTTAGCCAGTGGCTCCATCGTTTCAGACCATGTCTACACGGGCAATGGCTATCCGCCTCTCACTTTTCTCGAGCTTTTCAAAGCAAGTAAACTCCCTCTAACTTACTCAAAATTCGAAAACTCTATCGCCAAAAGAGGATTGAATTTGTCTGAAGTTTCTTGCGTTCCATTTACAATTGGTTGGTTTGGCCAGAAAACATCGAATAGAGCTCTGAAAGTGTCCTGTTTTTACCGAGGAGGAACTGTAAATGTCTTCTCGAGGCCTATCGAAGGAATCTCTTTATTAGTAGACGTAGATTCAATGAAAATCATCAGCTACACCGATAGACTTCGAGTTCCACTGCCGACAGCTGAAGGCACCGACTTCCAACCTTCAACCCCTCGTCTTAATTCCACTTTCTGCAAAAAATCAGAAAAGGGTTTCTCTATTAATGGCCACCAAGTGAAATGGGAGAACTGGGTATTTCACGTAGGTTTCAACGCCAGAGCAGGAGTTGTAATCTCCACAGCTTCAGTTTACGACAAAGAGAAGAAGAAACATAGAAAGGTTTTATACAGAGGGTACGTTTCAGAGACGTTTGTTCCTTACATGGACCCTGCAAAAGAATGGTATTTCAGGACTTTCATGGACGTTGGCGAGTTTGGATTCGGAAGAAGTGCAGAGAGTCTTGTGAGTTTGATTGATTGCCCAGAAAATGCAGAATACATTGATGGGTATTTGAATGGAGCAGATGGGAAAGCTCAGAAGATGTCTAGGGTTATCTGTGTTTTTGAAAAACATTCTGGGTCTGTTTCTTGGAGACATACTGAAATCAACGTTCCTGGCAAACTGATAAGTCGAGGGAAGGCAGAAAGAGGCTTGGTGGTAAGAATGGTGGCCACTGTTGGAAACTATGATTATGTTCTTGACTGGGAGTTCAAACGAAGTGGCTCCATCATTGTCGGCGTATTTCCCTGTTTTTTTATTTTCAATTATTTATTTTTTAATTATTATAAATAA 1305 43.07 MSLDFILVLFFLQYLFSPTISLHPLDPLSPDELNKVSLIIHSSHLAASLPNLTFHFVDLQEPDKPDVFRWLRRDGGEQRFVPPRRAKAVVRALGKTHELVVDLASGSIVSDHVYTGNGYPPLTFLELFKASKLPLTYSKFENSIAKRGLNLSEVSCVPFTIGWFGQKTSNRALKVSCFYRGGTVNVFSRPIEGISLLVDVDSMKIISYTDRLRVPLPTAEGTDFQPSTPRLNSTFCKKSEKGFSINGHQVKWENWVFHVGFNARAGVVISTASVYDKEKKKHRKVLYRGYVSETFVPYMDPAKEWYFRTFMDVGEFGFGRSAESLVSLIDCPENAEYIDGYLNGADGKAQKMSRVICVFEKHSGSVSWRHTEINVPGKLISRGKAERGLVVRMVATVGNYDYVLDWEFKRSGSIIVGVFPCFFIFNYLFFNYYK 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8933389 8934812 + Bma019313.1 Bma04g00788 81157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00788 434 Pfam Copper amine oxidase, N2 domain 23 112 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Bma04g00788 434 SUPERFAMILY Amine oxidase N-terminal region 20 119 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Bma04g00788 434 Gene3D - 122 214 - -
Bma04g00788 434 SUPERFAMILY Amine oxidase catalytic domain 239 416 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Bma04g00788 434 Gene3D Copper amine oxidase, catalytic domain 243 420 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Bma04g00788 434 Gene3D - 22 120 - -
Bma04g00788 434 PANTHER COPPER AMINE OXIDASE 6 418 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Bma04g00788 434 Pfam Copper amine oxidase, enzyme domain 241 417 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Bma04g00788 434 Pfam Copper amine oxidase, N3 domain 120 215 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Bma04g00788 434 SUPERFAMILY Amine oxidase N-terminal region 118 224 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Bma04g00788 434 ProSitePatterns Copper amine oxidase topaquinone signature. 389 402 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Bma04g00788 434 PANTHER PRIMARY AMINE OXIDASE 1 6 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00788 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - zju:107423201 580.482
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00788 Bma-Chr4:8933389 Bma14g00009 Bma-Chr14:114547 2.87E-101 dispersed
Bma04g00787 Bma-Chr4:8916414 Bma04g00788 Bma-Chr4:8933389 3.12E-141 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g480 . Blo12g00326 . . . . Bma04g00788 . . Cmo17g00227 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01716 Tan06g2527 . Lac12g2288 Hepe03g0191 . Lcy13g0276 . . . . . . . Lsi09g01326 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00788 Bma_Chr04 FPKM 6.530247 6.058013 5.579751 6.063359 6.516591 5.368085 6.084188 8.476182 7.578853 8.586547