Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00792 ATGTTAGGGAATCACCTACAAAATGGGATCGAGACAGCGAAGCTGGTCTGGTCTCGTCTTCCGGACGCGGAAGACGGGGAACTCGATGAGGTTGGAATCTCAAAGAAGAGTGATAGAGGTAGCGAGGAGAGTCTCGATTACGAGGTTATTGAGAATTATGCCTATTGGGAGGAGCAGTCTCAGCGTGGAAGACTTTTGGTTGGTTACTACGTAGTGGTTAAGTGGCTCTTTGCGTTGCTCATTGGCATCGGTACTGGGTTAGCTGCAGTTTTCATAAATATTTCTGTCGAGAACTTTGCTGGATGGAAGTTTGCATTGACATTTTCCATTATACAAAAAATATTTGGAAGCATTGGATCGGTAGGAGGGGGCTTGGCTTTAGGCAAAGAAGGTCCTCTTGTTCATACTGGTGCTTGTATTGCTTCTTTACTAGGACAAGGTGGATCAACGAAATATCATCTGAGTTCCAAGTGGTTACAAGTATTTAAAAGCGACCGAGATCGCCGTGATCTCGTGACCTGTGGATGTGCAGCAGGCGTTGCTGCAGCTTTTAGAGCTCCAGTCGGTGGTGTATTATTTGCCTTGGAAGAAGTTACATCTTGGTGGAGGAGTCAGCTTATGTGGCGTGTATTTTTTACTTCTGCTGTTGTTGCTGTTGTTGTCCGAACGGCAATGGGATGGTGTAAAAGTGGAAAGTGTGGACATTTCGGTTCTGGCGGCTTCATAATATGGGATATATCAGATGGTCAAGAGGACTACTCTTTTGGAGAGTTGTTGCCGATGGCTATTATTGGGGTCATTGGAGGCTTATTGGGTGCGTTATTCAACCAGCTTACTCTTTACATAACTTACTGGCGCAGGAATTTCTTACACAAGAAAGGAAACAGAGTCAAGATAATTGAGGCCTGTATTATCTCCTTCGTCACGTCAATTATTTCTTTTGGGCTGCCACTTTTTTACTGCAGTAAGGACAATGAGTACAATGACCTAGCCACGATTTTCTTTAACACACAGGATGATGCAATAAGGAATTTGTTCAGTGCCAAAACCTTTCATGAGTTCAGCGCCCAAAGTTTATTGACCTTTTTGGTCATGTTTTATTCTCTAGCTGTGGTGACATATGGCACTGCTGTTCCTGCTGGCCAATTTGTACCCGGTATAATGATTGGATCCACATATGGACGTTTAGTTGGCAAGTTGGTTGTTAACTTTTACCAGAAGCCCAACATTGAAGAGGGAACATATGCTCTTTTGGGTGCTGCTTCTTTTCTTGGAGGTTCAATGCGGATGACTGTGTCCTTATGTGTAATAATGGTTGAAATCACGAACAATTTGAAACTTCTACCACTTATCATGCTTGTTCTTCTTATCTCAAAGGCTGTTGGAGACACTTTCAACGAAGGACTATATGAGGAACAAGCACAATTGAAGGGTATCCCATTACTGGAGTCTAGACCAAAGTATCAGATGAGGAAAATTGCTGCAAAAGATGCCTGTGGAAGAAGGGTTGTCTCCTTTCCACGTGTTGTCAAGGTTGCAGACGTGGTTGAGATTTTGAGAAGCAACAATCATAATGGATTCCCTGTGATAGATCATGGAAGAAATGGGGAAGCACTTGTGACTGGGCTCATTCTTCGAAGTCATCTTTTGGGGCTTCTTTTGTCGAAGGAAGATTTCCAGCATAGTCCACTGCCTTCCGATCAAAGGGGATCCAGGCCAATCAGGCATAATTTGAGTGAGTTTGTGAAACCTGCTTCCAGTAAAGGCTTATCTATAGATGATATACACCTCAGCTCAGATGACTCAGAAATGTACATAGATCTTTTCCCATTTTTGAATCCCTCTCCATACATCGTTCCAGAAGACATGTCTTTGACGAAGGTATATAATCTTTTCAGGCAGCTAGGTCTAAGACATATATTTGTTGTCCCTCGTCCTTCGCGCGTTGTTGGTTTAATTACCAGGAAGGATTTGTTGATTGAGGTATCGAAATGA 1995 43.06 MLGNHLQNGIETAKLVWSRLPDAEDGELDEVGISKKSDRGSEESLDYEVIENYAYWEEQSQRGRLLVGYYVVVKWLFALLIGIGTGLAAVFINISVENFAGWKFALTFSIIQKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLSSKWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRTAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFGELLPMAIIGVIGGLLGALFNQLTLYITYWRRNFLHKKGNRVKIIEACIISFVTSIISFGLPLFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTFHEFSAQSLLTFLVMFYSLAVVTYGTAVPAGQFVPGIMIGSTYGRLVGKLVVNFYQKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDTFNEGLYEEQAQLKGIPLLESRPKYQMRKIAAKDACGRRVVSFPRVVKVADVVEILRSNNHNGFPVIDHGRNGEALVTGLILRSHLLGLLLSKEDFQHSPLPSDQRGSRPIRHNLSEFVKPASSKGLSIDDIHLSSDDSEMYIDLFPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHIFVVPRPSRVVGLITRKDLLIEVSK 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9004903 9013780 - Bma019317.2 Bma04g00792 81161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00792 664 SMART cbs_1 502 554 IPR000644 -
Bma04g00792 664 SMART cbs_1 615 663 IPR000644 -
Bma04g00792 664 Gene3D - 483 664 IPR046342 -
Bma04g00792 664 PRINTS Chloride channel signature 469 483 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma04g00792 664 PRINTS Chloride channel signature 431 450 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma04g00792 664 PRINTS Chloride channel signature 177 196 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma04g00792 664 PRINTS Chloride channel signature 378 398 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma04g00792 664 PRINTS Chloride channel signature 113 132 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma04g00792 664 PRINTS Chloride channel signature 413 429 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma04g00792 664 ProSiteProfiles CBS domain profile. 499 559 IPR000644 -
Bma04g00792 664 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 109 661 - -
Bma04g00792 664 SUPERFAMILY CBS-domain pair 488 659 IPR046342 -
Bma04g00792 664 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 113 - -
Bma04g00792 664 SUPERFAMILY Clc chloride channel 52 484 IPR014743 -
Bma04g00792 664 Gene3D Clc chloride channel 107 482 - -
Bma04g00792 664 CDD CBS_pair_voltage-gated_CLC_euk_bac 503 659 - -
Bma04g00792 664 ProSiteProfiles CBS domain profile. 612 664 IPR000644 -
Bma04g00792 664 Pfam Voltage gated chloride channel 110 462 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma04g00792 664 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 109 661 - -
Bma04g00792 664 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 113 - -
Bma04g00792 664 Pfam CBS domain 496 554 IPR000644 -
Bma04g00792 664 Pfam CBS domain 613 660 IPR000644 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00792 Bma05g00915 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00792 Bma-Chr4:9004903 Bma12g00031 Bma-Chr12:877510 1.45E-10 dispersed
Bma04g00792 Bma-Chr4:9004903 Bma05g00915 Bma-Chr5:47078947 1.18E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00792 K05016 - fve:101304179 1039.25