Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00793 ATGTCTTATAGACGGAATTTGAGTGTGCAAGGAGGGGCAGTCCATGATGACTACTGGTCCTCTTCCCTTAGACACATCTTCGGTGACAGCCATCAACTCTCTAGTAAAAATGATAATTTTGGTCATAAATATAACAATCACCATGATTACACTGGAAAATATAGAGATCAGATTGATAGATCTAAATACACAAGACTCAATAATTTTGACTACGTGAAGACTGCTGGATCAAATTCTTTGAAGAGGAGGAAGTTTACAGCTTCTACTTGGGAAGACAGTGGGAGGCACTACGTTCCCTCTAACTCTTACAGCTATGAGCCTTCTATCTACAGCAATTCAGTTCCTCCTTCAAGATCCCATGCCGATGAATCAACATCTACTAGCACTAAGCGGGCCTGGTCTAATTTGGATGATGATGAACCTGTTTTTATGTCAAAAGATGAGATTGAGAGATGTTCTCCATCAAGGAAAGATGGTATTGATGCGTTACGTGAGACCCATCTTCGTTATGCTTATTGTGCATTCCTTCAAGATCTTGGGTTGCGGCTTGAGCTACCACAAACTACCATTGGTACTGCTATGGTTCTATGCCATCGGTTTTTTGTTCGGCGATCACATGCTTGCCATGATAGATTTTTGATAGCCACTGCTGCGCTTTTCCTTGCTGCAAAATCTGAGGAGACGGCACGTCCTTTAAATAATGTCTTAAGAGTTTCTTGTGAGATTTTGCACAAACAAGATGTTACTTTCTTATCCTACACTCTTCCTATTGATTGGTTTGAGCAGTATAGGGCAAAGATTAGTTGA 807 40.77 MSYRRNLSVQGGAVHDDYWSSSLRHIFGDSHQLSSKNDNFGHKYNNHHDYTGKYRDQIDRSKYTRLNNFDYVKTAGSNSLKRRKFTASTWEDSGRHYVPSNSYSYEPSIYSNSVPPSRSHADESTSTSTKRAWSNLDDDEPVFMSKDEIERCSPSRKDGIDALRETHLRYAYCAFLQDLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFLIATAALFLAAKSEETARPLNNVLRVSCEILHKQDVTFLSYTLPIDWFEQYRAKIS 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9020235 9022090 - Bma019318.1 Bma04g00793 81162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00793 268 Pfam Cyclin, N-terminal domain 153 246 IPR006671 -
Bma04g00793 268 MobiDBLite consensus disorder prediction 109 132 - -
Bma04g00793 268 SUPERFAMILY Cyclin-like 142 250 IPR036915 -
Bma04g00793 268 PANTHER CYCLIN 69 267 IPR043198 GO:0006357|GO:0016538
Bma04g00793 268 MobiDBLite consensus disorder prediction 109 133 - -
Bma04g00793 268 Gene3D - 132 267 - -
Bma04g00793 268 CDD CYCLIN 168 246 IPR013763 -
Bma04g00793 268 PANTHER CYCLIN-T1-4-LIKE ISOFORM X1 69 267 - -
Bma04g00793 268 SMART cyclin_7 174 256 IPR013763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00793 K15188 CCNT; cyclin T - zju:107423038 349.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00793 Bma-Chr4:9020235 Bma12g00592 Bma-Chr12:26227960 2.97E-38 dispersed
Bma04g00793 Bma-Chr4:9020235 Bma07g00425 Bma-Chr7:5201650 3.79E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g467 . Blo12g00321 Bda03g00895 . Bpe04g00840 . Bma04g00793 . Cmo08g01129 Cmo17g00236 . . . . . . . . . . . . . . Cla06g00566 Cam06g0606 Cec06g0606 Cco06g0612 Clacu06g0592 Cmu06g0587 Cre06g1353 Cone14ag0837 . . . . . . . . . . . . . . . . . . Cma08g01155 Cma17g00251 Car08g01033 Car17g00225 Cpe12g00207 . Bhi12g01732 . . Lac12g2301 . . . . . . . . . . Lsi09g01335 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006517 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00793 Bma_Chr04 FPKM 4.11592 3.954812 4.385586 4.243744 4.791413 4.787539 4.622013 3.309249 3.594859 2.800831