Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00795 ATGAGTACAAACCAGGCAGCCAATAGCAGCGCCGGATCAGGCGGCAGTGGTAGCTCCGGATCAGGCGGCGGAGGTCCTTGCGGAGCTTGTAAGTTTCTGCGCAGAAAGTGCGTGCAGGGGTGCATATTCGCTCCGTACTTCGATTCAGAGCAAGGCGCCGCTCATTTCGCAGCGGTTCACAAGGTGTTCGGCGCAAGCAATGTGTCCAAGCTCCTACTACATCTTCCAGTCAACAAGCGACTCGATGCTGTCATAACCATTTGTTACGAGGCTCAAGCTCGCTTAAGAGATCCTGTTTATGGCTGCGTCTCTCACATCTTTGCCCTTCAACAGCAGGTAGTGAATCTACAAGCTGAGCTCTCGTACTTACAAGCACAGCTTAGCAACCCTCGAGCTCCCGTTGCCGCCTCCACCGCCTCCGCCTCCGCCATCTCTACTCACTCCGCTGCCGCTCTCCATCGCCAACCTCCCTTCGTCTGCCTCCATTCCCGCCTCGTATGA 501 56.09 MSTNQAANSSAGSGGSGSSGSGGGGPCGACKFLRRKCVQGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHLPVNKRLDAVITICYEAQARLRDPVYGCVSHIFALQQQVVNLQAELSYLQAQLSNPRAPVAASTASASAISTHSAAALHRQPPFVCLHSRLV 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9060705 9062311 + Bma019320.1 Bma04g00795 81164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00795 166 MobiDBLite consensus disorder prediction 1 20 - -
Bma04g00795 166 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 143 - -
Bma04g00795 166 Coils Coil 106 126 - -
Bma04g00795 166 ProSiteProfiles LOB domain profile. 25 127 IPR004883 -
Bma04g00795 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 143 - -
Bma04g00795 166 MobiDBLite consensus disorder prediction 1 23 - -
Bma04g00795 166 Pfam Lateral organ boundaries (LOB) domain 26 124 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00795 Bma-Chr4:9060705 Bma05g01116 Bma-Chr5:49931362 2.83E-63 dispersed
Bma05g01128 Bma-Chr5:50271815 Bma04g00795 Bma-Chr4:9060705 1.62E-67 transposed
Bma04g00795 Bma-Chr4:9060705 Bma05g01115 Bma-Chr5:49926679 1.09E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57195 PF03195 LOB 1.60E-38 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00795 K21994 - tcc:18614288 213.386