Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00845 ATGGGAAGGGGAAGAGTTGAGCTGAAGAGGATTGAGAACAAGATCAACAGACAAGTTACGTTTGCGAAGAGAAGGAATGGGATTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGTTGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCTAGTATGCTCACAACTCTGGAGAAGTACCAAAAGTGCAGCCATGGAGCACCAGAGCCTAGCATTTCCACTGGACAGGCATTGGAACTGAGCAGCCAACAGGAATATTTGAAGCTTAAAGCACGTTATGAATCACTGCTACAATCGCAAAGAAACCTAATGGGAGAAGATCTTGGTTCACTCAGTACAAAACAACTTGAGACACTTGAAATGCAGTTGGACATGTCTCTCCGGCAGATCAGATCAGTACGGACTCAGTACATGTTGGATCAGCTTACTGATCTTCAGCACAAGGAACAAGTTCTTACCGAAGCTAATAACACACTGAAACAAAATTTTCTTTTACATTTCCAGTTGATGGAGGGATATCAGCTGAACTCACTGCAACTGAATATGGGTATTAATGATTCCGGCTACGATAAACAGCTACATCAACCAGAGGGAGATGGATTCTTCCACCCTCTAGACTGCGATCCAACTCTTCAAATTGGGTATCCTTCTGATCAAATCACAGTCCTCACCGCCGGACCAGGCGTGAGTGATGATTACTTACCAGGATGGTTGGCTAAAAGATCGTCTTGA 762 43.7 MGRGRVELKRIENKINRQVTFAKRRNGILKKAYELSVLCDVEVALIIFSNRGKLYEFCSSSSMLTTLEKYQKCSHGAPEPSISTGQALELSSQQEYLKLKARYESLLQSQRNLMGEDLGSLSTKQLETLEMQLDMSLRQIRSVRTQYMLDQLTDLQHKEQVLTEANNTLKQNFLLHFQLMEGYQLNSLQLNMGINDSGYDKQLHQPEGDGFFHPLDCDPTLQIGYPSDQITVLTAGPGVSDDYLPGWLAKRSS 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10563643 10578350 + Bma019388.2 Bma04g00845 81214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00845 253 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Bma04g00845 253 ProSiteProfiles K-box domain profile. 89 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma04g00845 253 Coils Coil 126 146 - -
Bma04g00845 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma04g00845 253 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 235 - -
Bma04g00845 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma04g00845 253 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bma04g00845 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma04g00845 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma04g00845 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma04g00845 253 Pfam K-box region 91 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma04g00845 253 Coils Coil 152 172 - -
Bma04g00845 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 235 - -
Bma04g00845 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma04g00845 253 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Bma04g00845 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00845 Bma-Chr4:10563643 Bma06g01341 Bma-Chr6:50356222 8.07E-131 dispersed
Bma14g01058 Bma-Chr14:12791783 Bma04g00845 Bma-Chr4:10563643 8.90E-22 dispersed
Bma04g00845 Bma-Chr4:10563643 Bma04g00847 Bma-Chr4:10666803 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57198 PF01486 K-box 9.70E-24 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00845 - - csv:101216798 374.785