Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g00847 | ATGGGAAGGGGAAGAGTGGAGCTGAAGAGGATTGAGAACAAGATCAACAGACAAGTTACGTTTGCGAAGAGAAGGAATGGGATTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGTTGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCTAGTATGCTCACAACTCTGGAGAAGTACCAAAAGTGCAGCCATGGAGCACCAGAGCCTAGCATTTCCACTGGACAGGCATTGGAACTGAGCAGCCAACAGGAATATTTGAAGCTTAAAGCACGTTATGAATCACTGCTACAATCGCAAAGAAACCTAATGGGAGAAGATCTTGGTTCACTCAGTACAAAACAACTTGAGACACTTGAAATGCAGTTGGACATGTCTCTCCGGCAGATCAGATCAGTACGGACTCAGTACATGTTGGATCAGCTTACTGATCTTCAGCACAAGGAACAAGTTCTTACCGAAGCTAATAACACACTGAAACAAAATTTGATGGAGGGATATCAGCTGAACTCACTGCAACTGAATATGGGTATTAATGATTCCGGCTACGATAAACAGCTACATCAACCAGAGGGAGATGGATTCTTCCACCCTCGAGACTGCGATCCAACTCTTCAAATTGGGTATCCTTCTGATCAAATCACAGTCCTCGCCGCCGGACCAGGCGTGAGTGATGATTACTTACCAGGATGGTTGGCTAAAAGATCGTCTTGA | 744 | 44.49 | MGRGRVELKRIENKINRQVTFAKRRNGILKKAYELSVLCDVEVALIIFSNRGKLYEFCSSSSMLTTLEKYQKCSHGAPEPSISTGQALELSSQQEYLKLKARYESLLQSQRNLMGEDLGSLSTKQLETLEMQLDMSLRQIRSVRTQYMLDQLTDLQHKEQVLTEANNTLKQNLMEGYQLNSLQLNMGINDSGYDKQLHQPEGDGFFHPRDCDPTLQIGYPSDQITVLAAGPGVSDDYLPGWLAKRSS | 247 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10666803 | 10677952 | + | Bma019392.1 | Bma04g00847 | 81216 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g00847 | 247 | Gene3D | - | 13 | 79 | IPR036879 | GO:0003677|GO:0046983 | |
Bma04g00847 | 247 | Coils | Coil | 126 | 146 | - | - | |
Bma04g00847 | 247 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bma04g00847 | 247 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bma04g00847 | 247 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Bma04g00847 | 247 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG | 1 | 229 | - | - | |
Bma04g00847 | 247 | ProSiteProfiles | K-box domain profile. | 89 | 179 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma04g00847 | 247 | Pfam | K-box region | 91 | 173 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma04g00847 | 247 | SUPERFAMILY | SRF-like | 2 | 75 | IPR036879 | GO:0003677|GO:0046983 | |
Bma04g00847 | 247 | Coils | Coil | 152 | 172 | - | - | |
Bma04g00847 | 247 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 229 | - | - | |
Bma04g00847 | 247 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bma04g00847 | 247 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bma04g00847 | 247 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bma04g00847 | 247 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bma04g00847 | 247 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma02g01245 | Bma-Chr2:54543470 | Bma04g00847 | Bma-Chr4:10666803 | 1.15E-131 | dispersed | |
Bma04g00847 | Bma-Chr4:10666803 | Bma06g01341 | Bma-Chr6:50356222 | 2.66E-132 | dispersed | |
Bma15g00109 | Bma-Chr15:1166027 | Bma04g00847 | Bma-Chr4:10666803 | 1.88E-13 | dispersed | |
Bma04g00845 | Bma-Chr4:10563643 | Bma04g00847 | Bma-Chr4:10666803 | 0 | proximal | |
Bma04g00847 | Bma-Chr4:10666803 | Bma04g00849 | Bma-Chr4:10713036 | 1.15E-35 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57199 | PF01486 | K-box | 2.10E-23 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g00847 | - | - | csv:101216798 | 376.711 |