Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00847 ATGGGAAGGGGAAGAGTGGAGCTGAAGAGGATTGAGAACAAGATCAACAGACAAGTTACGTTTGCGAAGAGAAGGAATGGGATTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGTTGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCTAGTATGCTCACAACTCTGGAGAAGTACCAAAAGTGCAGCCATGGAGCACCAGAGCCTAGCATTTCCACTGGACAGGCATTGGAACTGAGCAGCCAACAGGAATATTTGAAGCTTAAAGCACGTTATGAATCACTGCTACAATCGCAAAGAAACCTAATGGGAGAAGATCTTGGTTCACTCAGTACAAAACAACTTGAGACACTTGAAATGCAGTTGGACATGTCTCTCCGGCAGATCAGATCAGTACGGACTCAGTACATGTTGGATCAGCTTACTGATCTTCAGCACAAGGAACAAGTTCTTACCGAAGCTAATAACACACTGAAACAAAATTTGATGGAGGGATATCAGCTGAACTCACTGCAACTGAATATGGGTATTAATGATTCCGGCTACGATAAACAGCTACATCAACCAGAGGGAGATGGATTCTTCCACCCTCGAGACTGCGATCCAACTCTTCAAATTGGGTATCCTTCTGATCAAATCACAGTCCTCGCCGCCGGACCAGGCGTGAGTGATGATTACTTACCAGGATGGTTGGCTAAAAGATCGTCTTGA 744 44.49 MGRGRVELKRIENKINRQVTFAKRRNGILKKAYELSVLCDVEVALIIFSNRGKLYEFCSSSSMLTTLEKYQKCSHGAPEPSISTGQALELSSQQEYLKLKARYESLLQSQRNLMGEDLGSLSTKQLETLEMQLDMSLRQIRSVRTQYMLDQLTDLQHKEQVLTEANNTLKQNLMEGYQLNSLQLNMGINDSGYDKQLHQPEGDGFFHPRDCDPTLQIGYPSDQITVLAAGPGVSDDYLPGWLAKRSS 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10666803 10677952 + Bma019392.1 Bma04g00847 81216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00847 247 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Bma04g00847 247 Coils Coil 126 146 - -
Bma04g00847 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma04g00847 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma04g00847 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bma04g00847 247 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 229 - -
Bma04g00847 247 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma04g00847 247 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma04g00847 247 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Bma04g00847 247 Coils Coil 152 172 - -
Bma04g00847 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Bma04g00847 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma04g00847 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma04g00847 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma04g00847 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma04g00847 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01245 Bma-Chr2:54543470 Bma04g00847 Bma-Chr4:10666803 1.15E-131 dispersed
Bma04g00847 Bma-Chr4:10666803 Bma06g01341 Bma-Chr6:50356222 2.66E-132 dispersed
Bma15g00109 Bma-Chr15:1166027 Bma04g00847 Bma-Chr4:10666803 1.88E-13 dispersed
Bma04g00845 Bma-Chr4:10563643 Bma04g00847 Bma-Chr4:10666803 0 proximal
Bma04g00847 Bma-Chr4:10666803 Bma04g00849 Bma-Chr4:10713036 1.15E-35 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57199 PF01486 K-box 2.10E-23 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00847 - - csv:101216798 376.711