Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g00854 | ATGAGTTTACTTCATGTGTTCGGGTTTTGTTTGAAGGTGGGGCATCTAATTTTGTTTGTATGCTACTGGGCTGTCCACTTGATTTCGAAGAACTGGTTCATCGATGGTGGAACAATGGAAACGAAAAATGATTTTCTGGGGGAGAGCCTCAAGGTTTGGCTCAAATTTTTGGAGATCACGGGAAAAAGTCGCAAGATCCATCATCAATATTACCAGTTTATAGGATCTAAGAGAGCGAGAACAACATGGCCAAGGAAGGTTTTTGTTGTTTGGGTGCTTGGTTGGACCTTAGTATCATTATTGATCTTCTGGTACACGAACTTGCAAGCGACTGAGAAGAGAAAAGAAACTCTTGGTAGTATGTGTGATGAGAGGGCAAGGATGTTACAAGATCAATTCAATGTGAGCATGAACCATATTCAGGCAATGTCCATTTTGATCTCAACCTTCCATCATGGCAAAAGTCCTTCGGCAATTGATCAAACAACTTTTGCTAGTTACACTGAAAGAACTGCTTTTGAGCGGCCTCTTACGAGTGGCGTGGCATATGCTGTAAGGGTGCTCCACTCTGAAAGAGAACAATTTGAGAAGCAGCAGGGATGGACTATTAAAAGAATGGATACAGTGAAACAAACCCCAATGCACAAAGATGATAATGCTCCGGAAGCCGTGGAACCATCTCCAATTCAAGAAGAATATGCTCCAGTCATCTTTGCCCAAGATACCGTTTCCCACGTGGTTTCGCTGGACATGCTGTCTGGCAAGGAAGACTGTGAAAATGTTTTGCGGGCAAGGGCATCTGGAACAGGGGTCCTGACTGCACCTTTCAGGTTATTGAAAACAAATCGACTTGGAGTAATATTAACTTTTGCTGTCTACAAAGTGGATCTCCCTTCAAATGCTACCCCAAATGAGAGAATTCAAGTGACTGATGGATATCTTGGTGGGATCTTTGACATTGAGTCCCTCGTGGAGAAATTACTTCAGCAACTTGCAAGCAAGCAAACCATCCTTGTCAATGTTTATGACACGACTAATCACTCACATCCAATCAGCATGTATGGTTCATATCTATCAGAAAATGGATTGCAGCATGTTAGCCCTCTCAACTTTGGAGATCCTTTCAGGAAGCATGAGATGCGTTGCAGATTGAAGCAAAAACCACCTTGGCCGTGGCTGGCTATAACAACTTCTGTTGGTGTACTTATTATTGCATTGCTGGTTGGGCATATATTCAATGCAACCTTGAATCGAATTGCCAAAGTAGAAGATGATTATCATGATATGATGGAACTCAAGAAACAGGCGGAGGCTGCGGATGTTGCAAAATCACAGTTCCTCGCAACTGTTTCCCATGAGATCCGAACTCCCATGAACGGTGTTCTAGGAATGTTGGATATGCTCATGGACACTGATCTAGATGTGACACAACTTGATTTTGTTAGAACTGCACAAGCAAGTGGAAAAGCTTTAGTCTCACTAATAAATGAGGTTTTGGATCAGGCAAAGATTGAATCCGGTAAGCTTGAACTTGAAGTGGTGCAGTTTGATCTGCAGGCTATTTTGGATGATGTTTTGTCACTCTTTTCGGGAAAATCACAGGAAAAAGGAGTAGAGTTGGCAGTTTACATTTCAGATCGTGTTCCTGAGATGCTGATTGGTGATCCTGGAAGGTTTCGACAAATCATTACTAATCTTATGGGAAATTCAATCAAGTTCACAGAGAAAGGACACATCTTTGTGACAGTTCATTTGGTGGAGGAGGTGATTGATTTAATTGATGTCGAGGTGGAGTCTTCATCGAAGAACACATTGAGTGGTTACCCTGTTGCCAATAGATGCCGAAGTTGGATGGGATTTAGGAGTTTCGACCAAGATGGCTATTCTCCCTCCATATCACCATCATCTGACCTTGTCAACCTAATTGTATCAGTTGAAGATACAGGTGTAGGGATCCCTTTAGAGTCTCAATCACGAATTTTCACTCCTTTTATGCAAGTGAGGCCATCAACCTCCCGGACCCATGGAGGAACAGGCATTGGGCTGAGTATAAGCAAATGCTTGGTTGGGCTCATGAAGGGAGAAATTGGATTTTCGAGCATCCCCAAGATAGGTTCCACCTTCTCTTTTACTGCTGTCTTCACAAAGGCTTGTGCTTCGGATGAATGCAAGCTCCAACAAATTAACAAGGAATCCAACTCTTCCTTCGCTGAATTTAAGGGCATGGGAGCATTAATTGTGGACCATAGACCCGTGAGGGCGAAGATGTCGAGATATCATATTCAACGACTTGGGATTCAAGTCGATATAGTTTCGGATCTGAATCATGGCCTATCTAGTAGTAGTTTTTACACAAATATCAATGCTATTTTTGTTGAGCAGGAAATTTGGGATCAGGACCCAGCTATTTCAGCTCTCTTTGCCACCAGCATGAAAAAATCTGATAATTGGGTTGCTCCAAAATTGTTTCTTTTGTCTAACTCTTTTAGCTCGTTGAAAACAAGCATGAGTACTTTTAATACTTTGAATCCAGTGGTCATCACAAAGCCGCTTCGATCAAGTATGCTTGCTGCCTCCCTCCAACGAGCCATGGGTGTAGGGAAGAACAAGGGTCATGTTTGTAATGGGGAACTTCCTAGTTTCTCTCAGCACAATCTTCTTCTGGGAAGGAAAATTCTAGTTGTAGATGATAACATCGTCAATCTCAAAGTTGCAGCGGGTGCTCTGAAAAAGTACGGTGCCGAAGTTGTTTGTGAGAGCAGTGGTAAAAATGCAATCTCGATGCTTACACCACCTCACCATTTTGATGCATGCTTTATGGATGTTCAAATGCCAGAAATGGATGGGTTTGAGGTGACAAAAAGGGTTCGGAATATTGAAGATTGTACTAACAGTAGACTTCAAAGTGGAGAGCTGATGGTGGAATCTTTTGAGAACATTTCAAACTGGCATTTACCTATTTTGGCCATGACGGCAGACGTAATCCAGGCTACCCAGGAGGAATGCCTACGATGTGGAATGGATGGATATGTCTCCAAACCTTTTGAAGCCGAGCAACTTTATCGAGAAGTTTCTCGCTTTTTCCGCTCTTCTTCAAATGGGAATTTGTAG | 3111 | 42.56 | MSLLHVFGFCLKVGHLILFVCYWAVHLISKNWFIDGGTMETKNDFLGESLKVWLKFLEITGKSRKIHHQYYQFIGSKRARTTWPRKVFVVWVLGWTLVSLLIFWYTNLQATEKRKETLGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKSPSAIDQTTFASYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTVKQTPMHKDDNAPEAVEPSPIQEEYAPVIFAQDTVSHVVSLDMLSGKEDCENVLRARASGTGVLTAPFRLLKTNRLGVILTFAVYKVDLPSNATPNERIQVTDGYLGGIFDIESLVEKLLQQLASKQTILVNVYDTTNHSHPISMYGSYLSENGLQHVSPLNFGDPFRKHEMRCRLKQKPPWPWLAITTSVGVLIIALLVGHIFNATLNRIAKVEDDYHDMMELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTDLDVTQLDFVRTAQASGKALVSLINEVLDQAKIESGKLELEVVQFDLQAILDDVLSLFSGKSQEKGVELAVYISDRVPEMLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVHLVEEVIDLIDVEVESSSKNTLSGYPVANRCRSWMGFRSFDQDGYSPSISPSSDLVNLIVSVEDTGVGIPLESQSRIFTPFMQVRPSTSRTHGGTGIGLSISKCLVGLMKGEIGFSSIPKIGSTFSFTAVFTKACASDECKLQQINKESNSSFAEFKGMGALIVDHRPVRAKMSRYHIQRLGIQVDIVSDLNHGLSSSSFYTNINAIFVEQEIWDQDPAISALFATSMKKSDNWVAPKLFLLSNSFSSLKTSMSTFNTLNPVVITKPLRSSMLAASLQRAMGVGKNKGHVCNGELPSFSQHNLLLGRKILVVDDNIVNLKVAAGALKKYGAEVVCESSGKNAISMLTPPHHFDACFMDVQMPEMDGFEVTKRVRNIEDCTNSRLQSGELMVESFENISNWHLPILAMTADVIQATQEECLRCGMDGYVSKPFEAEQLYREVSRFFRSSSNGNL | 1036 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10775691 | 10780439 | - | Bma019398.1 | Bma04g00854 | 81223 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g00854 | 1036 | SUPERFAMILY | Homodimeric domain of signal transducing histidine kinase | 428 | 508 | IPR036097 | GO:0000155|GO:0007165 | |
Bma04g00854 | 1036 | ProSiteProfiles | Histidine kinase domain profile. | 449 | 716 | IPR005467 | - | |
Bma04g00854 | 1036 | Pfam | CHASE domain | 158 | 354 | IPR006189 | - | |
Bma04g00854 | 1036 | SMART | REC_2 | 890 | 1024 | IPR001789 | GO:0000160 | |
Bma04g00854 | 1036 | Gene3D | CHASE domain | 159 | 388 | IPR042240 | - | |
Bma04g00854 | 1036 | Pfam | His Kinase A (phospho-acceptor) domain | 442 | 507 | IPR003661 | GO:0000155|GO:0007165 | |
Bma04g00854 | 1036 | CDD | HATPase_EvgS-ArcB-TorS-like | 559 | 714 | - | - | |
Bma04g00854 | 1036 | Gene3D | - | 506 | 717 | IPR036890 | - | |
Bma04g00854 | 1036 | SUPERFAMILY | CheY-like | 889 | 1029 | IPR011006 | - | |
Bma04g00854 | 1036 | CDD | HisKA | 442 | 503 | IPR003661 | GO:0000155|GO:0007165 | |
Bma04g00854 | 1036 | SMART | CHASE_2 | 155 | 356 | IPR006189 | - | |
Bma04g00854 | 1036 | PANTHER | HISTIDINE KINASE 3 | 55 | 1030 | - | - | |
Bma04g00854 | 1036 | PRINTS | Bacterial sensor protein C-terminal signature | 641 | 655 | IPR004358 | GO:0016310|GO:0016772 | |
Bma04g00854 | 1036 | PRINTS | Bacterial sensor protein C-terminal signature | 659 | 669 | IPR004358 | GO:0016310|GO:0016772 | |
Bma04g00854 | 1036 | PRINTS | Bacterial sensor protein C-terminal signature | 676 | 694 | IPR004358 | GO:0016310|GO:0016772 | |
Bma04g00854 | 1036 | ProSiteProfiles | Response regulatory domain profile. | 891 | 1028 | IPR001789 | GO:0000160 | |
Bma04g00854 | 1036 | SMART | HisKA_10 | 442 | 507 | IPR003661 | GO:0000155|GO:0007165 | |
Bma04g00854 | 1036 | Coils | Coil | 419 | 439 | - | - | |
Bma04g00854 | 1036 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 55 | 1030 | - | - | |
Bma04g00854 | 1036 | ProSiteProfiles | CHASE domain profile. | 155 | 381 | IPR006189 | - | |
Bma04g00854 | 1036 | Gene3D | - | 107 | 158 | - | - | |
Bma04g00854 | 1036 | SMART | HKATPase_4 | 554 | 716 | IPR003594 | - | |
Bma04g00854 | 1036 | Pfam | Response regulator receiver domain | 892 | 1023 | IPR001789 | GO:0000160 | |
Bma04g00854 | 1036 | SUPERFAMILY | CheY-like | 738 | 865 | IPR011006 | - | |
Bma04g00854 | 1036 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 554 | 715 | IPR003594 | - | |
Bma04g00854 | 1036 | Gene3D | - | 886 | 1032 | - | - | |
Bma04g00854 | 1036 | CDD | REC_hyHK_CKI1_RcsC-like | 892 | 1024 | - | - | |
Bma04g00854 | 1036 | CDD | PRTases_typeI | 843 | 917 | IPR000836 | - | |
Bma04g00854 | 1036 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 496 | 711 | IPR036890 | - | |
Bma04g00854 | 1036 | Gene3D | - | 410 | 505 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma02g01307 | Bma-Chr2:55200405 | Bma04g00854 | Bma-Chr4:10775691 | 0 | dispersed | |
Bma03g00954 | Bma-Chr3:10148622 | Bma04g00854 | Bma-Chr4:10775691 | 2.38E-44 | dispersed | |
Bma04g00854 | Bma-Chr4:10775691 | Bma12g00867 | Bma-Chr12:39647127 | 1.12E-21 | dispersed | |
Bma01g02184 | Bma-Chr1:78756518 | Bma04g00854 | Bma-Chr4:10775691 | 1.11E-33 | transposed | |
Bma09g00776 | Bma-Chr9:46317972 | Bma04g00854 | Bma-Chr4:10775691 | 2.62E-32 | transposed | |
Bma10g00953 | Bma-Chr10:20602754 | Bma04g00854 | Bma-Chr4:10775691 | 3.76E-84 | transposed | |
Bma14g01923 | Bma-Chr14:41020093 | Bma04g00854 | Bma-Chr4:10775691 | 0 | transposed | |
Bma04g00854 | Bma-Chr4:10775691 | Bma05g01135 | Bma-Chr5:50403104 | 7.05E-24 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57203 | PF03924 | CHASE | 1.10E-34 | CL0165 | Bma | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g00854 | K14489 | - | csin:114293806 | 1533.85 |