Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00854 ATGAGTTTACTTCATGTGTTCGGGTTTTGTTTGAAGGTGGGGCATCTAATTTTGTTTGTATGCTACTGGGCTGTCCACTTGATTTCGAAGAACTGGTTCATCGATGGTGGAACAATGGAAACGAAAAATGATTTTCTGGGGGAGAGCCTCAAGGTTTGGCTCAAATTTTTGGAGATCACGGGAAAAAGTCGCAAGATCCATCATCAATATTACCAGTTTATAGGATCTAAGAGAGCGAGAACAACATGGCCAAGGAAGGTTTTTGTTGTTTGGGTGCTTGGTTGGACCTTAGTATCATTATTGATCTTCTGGTACACGAACTTGCAAGCGACTGAGAAGAGAAAAGAAACTCTTGGTAGTATGTGTGATGAGAGGGCAAGGATGTTACAAGATCAATTCAATGTGAGCATGAACCATATTCAGGCAATGTCCATTTTGATCTCAACCTTCCATCATGGCAAAAGTCCTTCGGCAATTGATCAAACAACTTTTGCTAGTTACACTGAAAGAACTGCTTTTGAGCGGCCTCTTACGAGTGGCGTGGCATATGCTGTAAGGGTGCTCCACTCTGAAAGAGAACAATTTGAGAAGCAGCAGGGATGGACTATTAAAAGAATGGATACAGTGAAACAAACCCCAATGCACAAAGATGATAATGCTCCGGAAGCCGTGGAACCATCTCCAATTCAAGAAGAATATGCTCCAGTCATCTTTGCCCAAGATACCGTTTCCCACGTGGTTTCGCTGGACATGCTGTCTGGCAAGGAAGACTGTGAAAATGTTTTGCGGGCAAGGGCATCTGGAACAGGGGTCCTGACTGCACCTTTCAGGTTATTGAAAACAAATCGACTTGGAGTAATATTAACTTTTGCTGTCTACAAAGTGGATCTCCCTTCAAATGCTACCCCAAATGAGAGAATTCAAGTGACTGATGGATATCTTGGTGGGATCTTTGACATTGAGTCCCTCGTGGAGAAATTACTTCAGCAACTTGCAAGCAAGCAAACCATCCTTGTCAATGTTTATGACACGACTAATCACTCACATCCAATCAGCATGTATGGTTCATATCTATCAGAAAATGGATTGCAGCATGTTAGCCCTCTCAACTTTGGAGATCCTTTCAGGAAGCATGAGATGCGTTGCAGATTGAAGCAAAAACCACCTTGGCCGTGGCTGGCTATAACAACTTCTGTTGGTGTACTTATTATTGCATTGCTGGTTGGGCATATATTCAATGCAACCTTGAATCGAATTGCCAAAGTAGAAGATGATTATCATGATATGATGGAACTCAAGAAACAGGCGGAGGCTGCGGATGTTGCAAAATCACAGTTCCTCGCAACTGTTTCCCATGAGATCCGAACTCCCATGAACGGTGTTCTAGGAATGTTGGATATGCTCATGGACACTGATCTAGATGTGACACAACTTGATTTTGTTAGAACTGCACAAGCAAGTGGAAAAGCTTTAGTCTCACTAATAAATGAGGTTTTGGATCAGGCAAAGATTGAATCCGGTAAGCTTGAACTTGAAGTGGTGCAGTTTGATCTGCAGGCTATTTTGGATGATGTTTTGTCACTCTTTTCGGGAAAATCACAGGAAAAAGGAGTAGAGTTGGCAGTTTACATTTCAGATCGTGTTCCTGAGATGCTGATTGGTGATCCTGGAAGGTTTCGACAAATCATTACTAATCTTATGGGAAATTCAATCAAGTTCACAGAGAAAGGACACATCTTTGTGACAGTTCATTTGGTGGAGGAGGTGATTGATTTAATTGATGTCGAGGTGGAGTCTTCATCGAAGAACACATTGAGTGGTTACCCTGTTGCCAATAGATGCCGAAGTTGGATGGGATTTAGGAGTTTCGACCAAGATGGCTATTCTCCCTCCATATCACCATCATCTGACCTTGTCAACCTAATTGTATCAGTTGAAGATACAGGTGTAGGGATCCCTTTAGAGTCTCAATCACGAATTTTCACTCCTTTTATGCAAGTGAGGCCATCAACCTCCCGGACCCATGGAGGAACAGGCATTGGGCTGAGTATAAGCAAATGCTTGGTTGGGCTCATGAAGGGAGAAATTGGATTTTCGAGCATCCCCAAGATAGGTTCCACCTTCTCTTTTACTGCTGTCTTCACAAAGGCTTGTGCTTCGGATGAATGCAAGCTCCAACAAATTAACAAGGAATCCAACTCTTCCTTCGCTGAATTTAAGGGCATGGGAGCATTAATTGTGGACCATAGACCCGTGAGGGCGAAGATGTCGAGATATCATATTCAACGACTTGGGATTCAAGTCGATATAGTTTCGGATCTGAATCATGGCCTATCTAGTAGTAGTTTTTACACAAATATCAATGCTATTTTTGTTGAGCAGGAAATTTGGGATCAGGACCCAGCTATTTCAGCTCTCTTTGCCACCAGCATGAAAAAATCTGATAATTGGGTTGCTCCAAAATTGTTTCTTTTGTCTAACTCTTTTAGCTCGTTGAAAACAAGCATGAGTACTTTTAATACTTTGAATCCAGTGGTCATCACAAAGCCGCTTCGATCAAGTATGCTTGCTGCCTCCCTCCAACGAGCCATGGGTGTAGGGAAGAACAAGGGTCATGTTTGTAATGGGGAACTTCCTAGTTTCTCTCAGCACAATCTTCTTCTGGGAAGGAAAATTCTAGTTGTAGATGATAACATCGTCAATCTCAAAGTTGCAGCGGGTGCTCTGAAAAAGTACGGTGCCGAAGTTGTTTGTGAGAGCAGTGGTAAAAATGCAATCTCGATGCTTACACCACCTCACCATTTTGATGCATGCTTTATGGATGTTCAAATGCCAGAAATGGATGGGTTTGAGGTGACAAAAAGGGTTCGGAATATTGAAGATTGTACTAACAGTAGACTTCAAAGTGGAGAGCTGATGGTGGAATCTTTTGAGAACATTTCAAACTGGCATTTACCTATTTTGGCCATGACGGCAGACGTAATCCAGGCTACCCAGGAGGAATGCCTACGATGTGGAATGGATGGATATGTCTCCAAACCTTTTGAAGCCGAGCAACTTTATCGAGAAGTTTCTCGCTTTTTCCGCTCTTCTTCAAATGGGAATTTGTAG 3111 42.56 MSLLHVFGFCLKVGHLILFVCYWAVHLISKNWFIDGGTMETKNDFLGESLKVWLKFLEITGKSRKIHHQYYQFIGSKRARTTWPRKVFVVWVLGWTLVSLLIFWYTNLQATEKRKETLGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKSPSAIDQTTFASYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTVKQTPMHKDDNAPEAVEPSPIQEEYAPVIFAQDTVSHVVSLDMLSGKEDCENVLRARASGTGVLTAPFRLLKTNRLGVILTFAVYKVDLPSNATPNERIQVTDGYLGGIFDIESLVEKLLQQLASKQTILVNVYDTTNHSHPISMYGSYLSENGLQHVSPLNFGDPFRKHEMRCRLKQKPPWPWLAITTSVGVLIIALLVGHIFNATLNRIAKVEDDYHDMMELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTDLDVTQLDFVRTAQASGKALVSLINEVLDQAKIESGKLELEVVQFDLQAILDDVLSLFSGKSQEKGVELAVYISDRVPEMLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVHLVEEVIDLIDVEVESSSKNTLSGYPVANRCRSWMGFRSFDQDGYSPSISPSSDLVNLIVSVEDTGVGIPLESQSRIFTPFMQVRPSTSRTHGGTGIGLSISKCLVGLMKGEIGFSSIPKIGSTFSFTAVFTKACASDECKLQQINKESNSSFAEFKGMGALIVDHRPVRAKMSRYHIQRLGIQVDIVSDLNHGLSSSSFYTNINAIFVEQEIWDQDPAISALFATSMKKSDNWVAPKLFLLSNSFSSLKTSMSTFNTLNPVVITKPLRSSMLAASLQRAMGVGKNKGHVCNGELPSFSQHNLLLGRKILVVDDNIVNLKVAAGALKKYGAEVVCESSGKNAISMLTPPHHFDACFMDVQMPEMDGFEVTKRVRNIEDCTNSRLQSGELMVESFENISNWHLPILAMTADVIQATQEECLRCGMDGYVSKPFEAEQLYREVSRFFRSSSNGNL 1036
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 10775691 10780439 - Bma019398.1 Bma04g00854 81223
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00854 1036 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 428 508 IPR036097 GO:0000155|GO:0007165
Bma04g00854 1036 ProSiteProfiles Histidine kinase domain profile. 449 716 IPR005467 -
Bma04g00854 1036 Pfam CHASE domain 158 354 IPR006189 -
Bma04g00854 1036 SMART REC_2 890 1024 IPR001789 GO:0000160
Bma04g00854 1036 Gene3D CHASE domain 159 388 IPR042240 -
Bma04g00854 1036 Pfam His Kinase A (phospho-acceptor) domain 442 507 IPR003661 GO:0000155|GO:0007165
Bma04g00854 1036 CDD HATPase_EvgS-ArcB-TorS-like 559 714 - -
Bma04g00854 1036 Gene3D - 506 717 IPR036890 -
Bma04g00854 1036 SUPERFAMILY CheY-like 889 1029 IPR011006 -
Bma04g00854 1036 CDD HisKA 442 503 IPR003661 GO:0000155|GO:0007165
Bma04g00854 1036 SMART CHASE_2 155 356 IPR006189 -
Bma04g00854 1036 PANTHER HISTIDINE KINASE 3 55 1030 - -
Bma04g00854 1036 PRINTS Bacterial sensor protein C-terminal signature 641 655 IPR004358 GO:0016310|GO:0016772
Bma04g00854 1036 PRINTS Bacterial sensor protein C-terminal signature 659 669 IPR004358 GO:0016310|GO:0016772
Bma04g00854 1036 PRINTS Bacterial sensor protein C-terminal signature 676 694 IPR004358 GO:0016310|GO:0016772
Bma04g00854 1036 ProSiteProfiles Response regulatory domain profile. 891 1028 IPR001789 GO:0000160
Bma04g00854 1036 SMART HisKA_10 442 507 IPR003661 GO:0000155|GO:0007165
Bma04g00854 1036 Coils Coil 419 439 - -
Bma04g00854 1036 PANTHER TWO-COMPONENT HISTIDINE KINASE 55 1030 - -
Bma04g00854 1036 ProSiteProfiles CHASE domain profile. 155 381 IPR006189 -
Bma04g00854 1036 Gene3D - 107 158 - -
Bma04g00854 1036 SMART HKATPase_4 554 716 IPR003594 -
Bma04g00854 1036 Pfam Response regulator receiver domain 892 1023 IPR001789 GO:0000160
Bma04g00854 1036 SUPERFAMILY CheY-like 738 865 IPR011006 -
Bma04g00854 1036 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 554 715 IPR003594 -
Bma04g00854 1036 Gene3D - 886 1032 - -
Bma04g00854 1036 CDD REC_hyHK_CKI1_RcsC-like 892 1024 - -
Bma04g00854 1036 CDD PRTases_typeI 843 917 IPR000836 -
Bma04g00854 1036 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 496 711 IPR036890 -
Bma04g00854 1036 Gene3D - 410 505 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01307 Bma-Chr2:55200405 Bma04g00854 Bma-Chr4:10775691 0 dispersed
Bma03g00954 Bma-Chr3:10148622 Bma04g00854 Bma-Chr4:10775691 2.38E-44 dispersed
Bma04g00854 Bma-Chr4:10775691 Bma12g00867 Bma-Chr12:39647127 1.12E-21 dispersed
Bma01g02184 Bma-Chr1:78756518 Bma04g00854 Bma-Chr4:10775691 1.11E-33 transposed
Bma09g00776 Bma-Chr9:46317972 Bma04g00854 Bma-Chr4:10775691 2.62E-32 transposed
Bma10g00953 Bma-Chr10:20602754 Bma04g00854 Bma-Chr4:10775691 3.76E-84 transposed
Bma14g01923 Bma-Chr14:41020093 Bma04g00854 Bma-Chr4:10775691 0 transposed
Bma04g00854 Bma-Chr4:10775691 Bma05g01135 Bma-Chr5:50403104 7.05E-24 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57203 PF03924 CHASE 1.10E-34 CL0165 Bma TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00854 K14489 - csin:114293806 1533.85