Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00857 ATGGAGGTGGGAAAAATGGTGGGCCATAAAAGAAGCTCGTGCGCTGTTAATCAAGAAGATGATTTCATGGCGCCTACAAGCAAAAGACACAAGGCTGGTGTTTCTCTCTCTACAAAGGAGAGAAAAGAGAGGCTGAATGGAAAGATCATAGCTCTTCAACAGCTCGTTTCACCGTACGGAAAGACGGATACAGCTTCTGTTCTGCTGGAAGCCATGGGTTACATTCAATTTCTCCACGAGCAGCTCAAGGTGTTGAGTGCTCCGTATCTCCATGGCTCTCCGACGGCGAAGATGCAGGGGATAGAGATAGAGACGTACAGATACAGCCTAAGAATCAGAGGTTTATCAATTGTTCCTCTCTGCTTTACTGAAGGAGTAGCCCGCAGCAATGGAGCAGATATGTGGGCTCCTGTTTACATTAAATCCCCTGTATTTCACGACCCCATTTCATCACTTCATTGA 462 46.54 MEVGKMVGHKRSSCAVNQEDDFMAPTSKRHKAGVSLSTKERKERLNGKIIALQQLVSPYGKTDTASVLLEAMGYIQFLHEQLKVLSAPYLHGSPTAKMQGIEIETYRYSLRIRGLSIVPLCFTEGVARSNGADMWAPVYIKSPVFHDPISSLH 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10845691 10846488 - Bma019403.2 Bma04g00857 81226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00857 153 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 29 78 IPR011598 GO:0046983
Bma04g00857 153 CDD bHLH_AtbHLH_like 35 86 IPR045239 -
Bma04g00857 153 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 135 - -
Bma04g00857 153 PANTHER TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 1 135 - -
Bma04g00857 153 Gene3D - 26 91 IPR036638 GO:0046983
Bma04g00857 153 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 28 90 IPR036638 GO:0046983
Bma04g00857 153 SMART finulus 35 84 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00857 - - - pper:18793757 183.341
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01254 Bma-Chr2:54592366 Bma04g00857 Bma-Chr4:10845691 3.95E-54 dispersed
Bma04g00857 Bma-Chr4:10845691 Bma13g00994 Bma-Chr13:42094371 1.36E-25 dispersed
Bma04g00857 Bma-Chr4:10845691 Bma10g00524 Bma-Chr10:6086778 1.60E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1321 . Blo12g00272 Bda03g00963 . Bpe04g00891 Bpe14g00789 Bma04g00857 . . . . Cma14g01438 Car06g01427 . . . . Bhi01g03682 . . . . . . . . . . . . . Cone14ag0621 Cone15ag0629 . . . . . . . . . Bda13g00540 . . . . . Cmo06g01675 Cmo14g01474 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003372 2 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 2 1 1 1 9 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00857 Bma_Chr04 FPKM 5.40567 5.371517 0.290284 0.419948 0.379808 0.319856 0.551697 0.16639 0.161819 0.170852