Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00860 ATGGCGTCCGCAGTGATGATGGCGATGACAGTTCTTTCTTCAGATATCCAGGCACTCCATTTCTCTAGAATTTTAGTTAAAAGAGACGGCCAAAATATCCTCAAATGCCTGAACACTACGAGCAGTGGTTTCAATTTCAACTATAATGATCTCTTTAAGAGGCAATCGCCATCAACCTTTCATAGTCCCCGAAAGAGGAATTCTAGATTCCTGTTCAAACCGTTAGCTAGTTCAGGTTTGGAGGCATCTATTGCAGATCCCAAAGAAAGTTCTATAACTCTGAAAAATGCTAAAATAGTAGTTGAATCTCAAGACGAAAACACTATGCAAGTAAGAGTAGATTTGGCTGGAGATGAGACGCAAAAAGTATTTGATCATGTCTTAAAAAATTTAGCTCGCTCAGCTCCACCAATTCCAGGATTTCGTCGACAAAAAGGAGGAAAAACTTCCAATGTTCCAACAAGCTTCCTCTTAGACGTTCTTGGTAAAGAGCGGGTGACTAAGTTTGTCATACAGGAAATCGTGAGCTCAACCATGGCTGATTATGCTGAGAAGGAAAAGTTGAACGTGAAGGAAAAGAAGATCAACACAACTCAGTCGTTGGAAGAATTGAAGCAACTTTTCGCACCAGGAAGTGAATTTGGATTCAATGCGGTTATTGAACTTGAATCTGCTTCAAAATCTGAATCTTTGAGCTGA 699 40.06 MASAVMMAMTVLSSDIQALHFSRILVKRDGQNILKCLNTTSSGFNFNYNDLFKRQSPSTFHSPRKRNSRFLFKPLASSGLEASIADPKESSITLKNAKIVVESQDENTMQVRVDLAGDETQKVFDHVLKNLARSAPPIPGFRRQKGGKTSNVPTSFLLDVLGKERVTKFVIQEIVSSTMADYAEKEKLNVKEKKINTTQSLEELKQLFAPGSEFGFNAVIELESASKSESLS 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11006527 11014716 - Bma019410.1 Bma04g00860 81229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00860 232 Gene3D - 99 223 IPR036611 GO:0006457|GO:0015031
Bma04g00860 232 SUPERFAMILY Trigger factor ribosome-binding domain 98 219 IPR036611 GO:0006457|GO:0015031
Bma04g00860 232 PANTHER OS01G0894700 PROTEIN 1 229 - -
Bma04g00860 232 Pfam Bacterial trigger factor protein (TF) 98 223 IPR008881 GO:0006457|GO:0015031
Bma04g00860 232 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 1 229 IPR005215 GO:0015031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00860 - - - csv:101212225 241.506
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00860 Bma-Chr4:11006527 Bma07g00984 Bma-Chr7:37971829 2.85E-96 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1314 . Blo12g00271 Bda03g00968 . Bpe04g00893 . Bma04g00860 . . Cmo17g00601 . . . . . . . . . . . . . . Cla06g00099 Cam06g0116 . Cco06g0110 Clacu06g0112 Cmu06g0110 Cre06g0880 . Cone15ag0632 . . . . . . . . . . . . . . . . . . Cma17g00616 . Car17g00582 . . Bhi12g02476 . . . Hepe03g1095 . . . . . . . . . . . . Cme11g02439
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011773 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00860 Bma_Chr04 FPKM 1.134591 0.991704 0.594859 0.881715 0.34813 0.335799 0.230984 3.095327 3.07702 2.663687