Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00875 ATGTCTCAATCAGATCGTTACAGACCTAGATTGGTGATCAAGAAAGTTTTGGCTAAGCTTCAGCAGGAAGGAGTTGGTGCTGTTGTTAGGCGAGGCATTGGAAGGAGTGATTTGAAGAACTTGGATCCATTCCTATTGTTGGATGACTTCTCAGTGGGTCCCCCTGCTGGATTTCCAGATCATCCGCACAGAGGTTCTAAATTTATCACCAGAGGAGGGATTACCCATCAAGACTTTGCAGGGCACAAGGGTACGATCTGGACAGGAGATGTGCAGTGGATGACGGCAGGTAGAGGGATTGTCCACTCCGAAATGCCAGCTGGTGAAGGAAGCCAAACTGGTTTGCAGCTTTGGATCAACTTATCATCCAAAGACAAAATGATTGAACCAAGATATCAAGAGCTCCTAAGTGATGAAATCCCAAGATCGGAAAAAGACGGTGTCGAAGTTCGAGTTATCGCCGGAGAATCAATGGCTGTACAGTCTCCGGTCTACACCAGAACTCCGACGATGTACCTTGATTTTACTCTAAAACCGAGAGCTCAAATGCATCAAAATATCCCAGAATTGTGGAACTCATTTGTGTATATAATTGAAGGAGACGGTGTTTTTGGTACACCAAATTCATTGCCGGTAGCTGCTCATCACGTTCTCGTCTTGGGACCCGGAAATGGTTTAAGTGTGTGGAATAGGTCTTCAAAGACTCTGAGATTTGTGTTGATTGCTGGGCAGCCATTGAACGAGTCTGTGGTTCAACACGGACCGTTTGTGATGAACACTCAAGATGAAATTGATCAAGCCATTGAAGACTATCATTTCTGCAAAAATGGGTTTGAAATGGCCAAGTATTGGAGATCTCAATGA 864 44.68 MSQSDRYRPRLVIKKVLAKLQQEGVGAVVRRGIGRSDLKNLDPFLLLDDFSVGPPAGFPDHPHRGSKFITRGGITHQDFAGHKGTIWTGDVQWMTAGRGIVHSEMPAGEGSQTGLQLWINLSSKDKMIEPRYQELLSDEIPRSEKDGVEVRVIAGESMAVQSPVYTRTPTMYLDFTLKPRAQMHQNIPELWNSFVYIIEGDGVFGTPNSLPVAAHHVLVLGPGNGLSVWNRSSKTLRFVLIAGQPLNESVVQHGPFVMNTQDEIDQAIEDYHFCKNGFEMAKYWRSQ 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11518220 11519845 - Bma019426.3 Bma04g00875 81244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00875 287 PANTHER PIRIN-RELATED 8 287 IPR012093 -
Bma04g00875 287 CDD cupin_pirin_C 169 245 - -
Bma04g00875 287 PANTHER PIRIN-LIKE PROTEIN 8 287 - -
Bma04g00875 287 PIRSF Pirin 8 285 IPR012093 -
Bma04g00875 287 Gene3D Jelly Rolls 141 246 IPR014710 -
Bma04g00875 287 Pfam Pirin 30 119 IPR003829 -
Bma04g00875 287 Gene3D Jelly Rolls 23 272 IPR014710 -
Bma04g00875 287 CDD cupin_pirin_N 27 121 - -
Bma04g00875 287 Pfam Pirin C-terminal cupin domain 172 276 IPR008778 -
Bma04g00875 287 SUPERFAMILY RmlC-like cupins 10 285 IPR011051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01272 Bma-Chr7:48268993 Bma04g00875 Bma-Chr4:11518220 3.93E-128 transposed
Bma04g00875 Bma-Chr4:11518220 Bma05g01176 Bma-Chr5:50899001 5.19E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00875 K06911 - mnt:21404588 484.567