Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g00875 | ATGTCTCAATCAGATCGTTACAGACCTAGATTGGTGATCAAGAAAGTTTTGGCTAAGCTTCAGCAGGAAGGAGTTGGTGCTGTTGTTAGGCGAGGCATTGGAAGGAGTGATTTGAAGAACTTGGATCCATTCCTATTGTTGGATGACTTCTCAGTGGGTCCCCCTGCTGGATTTCCAGATCATCCGCACAGAGGTTCTAAATTTATCACCAGAGGAGGGATTACCCATCAAGACTTTGCAGGGCACAAGGGTACGATCTGGACAGGAGATGTGCAGTGGATGACGGCAGGTAGAGGGATTGTCCACTCCGAAATGCCAGCTGGTGAAGGAAGCCAAACTGGTTTGCAGCTTTGGATCAACTTATCATCCAAAGACAAAATGATTGAACCAAGATATCAAGAGCTCCTAAGTGATGAAATCCCAAGATCGGAAAAAGACGGTGTCGAAGTTCGAGTTATCGCCGGAGAATCAATGGCTGTACAGTCTCCGGTCTACACCAGAACTCCGACGATGTACCTTGATTTTACTCTAAAACCGAGAGCTCAAATGCATCAAAATATCCCAGAATTGTGGAACTCATTTGTGTATATAATTGAAGGAGACGGTGTTTTTGGTACACCAAATTCATTGCCGGTAGCTGCTCATCACGTTCTCGTCTTGGGACCCGGAAATGGTTTAAGTGTGTGGAATAGGTCTTCAAAGACTCTGAGATTTGTGTTGATTGCTGGGCAGCCATTGAACGAGTCTGTGGTTCAACACGGACCGTTTGTGATGAACACTCAAGATGAAATTGATCAAGCCATTGAAGACTATCATTTCTGCAAAAATGGGTTTGAAATGGCCAAGTATTGGAGATCTCAATGA | 864 | 44.68 | MSQSDRYRPRLVIKKVLAKLQQEGVGAVVRRGIGRSDLKNLDPFLLLDDFSVGPPAGFPDHPHRGSKFITRGGITHQDFAGHKGTIWTGDVQWMTAGRGIVHSEMPAGEGSQTGLQLWINLSSKDKMIEPRYQELLSDEIPRSEKDGVEVRVIAGESMAVQSPVYTRTPTMYLDFTLKPRAQMHQNIPELWNSFVYIIEGDGVFGTPNSLPVAAHHVLVLGPGNGLSVWNRSSKTLRFVLIAGQPLNESVVQHGPFVMNTQDEIDQAIEDYHFCKNGFEMAKYWRSQ | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11518220 | 11519845 | - | Bma019426.3 | Bma04g00875 | 81244 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g00875 | 287 | PANTHER | PIRIN-RELATED | 8 | 287 | IPR012093 | - | |
Bma04g00875 | 287 | CDD | cupin_pirin_C | 169 | 245 | - | - | |
Bma04g00875 | 287 | PANTHER | PIRIN-LIKE PROTEIN | 8 | 287 | - | - | |
Bma04g00875 | 287 | PIRSF | Pirin | 8 | 285 | IPR012093 | - | |
Bma04g00875 | 287 | Gene3D | Jelly Rolls | 141 | 246 | IPR014710 | - | |
Bma04g00875 | 287 | Pfam | Pirin | 30 | 119 | IPR003829 | - | |
Bma04g00875 | 287 | Gene3D | Jelly Rolls | 23 | 272 | IPR014710 | - | |
Bma04g00875 | 287 | CDD | cupin_pirin_N | 27 | 121 | - | - | |
Bma04g00875 | 287 | Pfam | Pirin C-terminal cupin domain | 172 | 276 | IPR008778 | - | |
Bma04g00875 | 287 | SUPERFAMILY | RmlC-like cupins | 10 | 285 | IPR011051 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma07g01272 | Bma-Chr7:48268993 | Bma04g00875 | Bma-Chr4:11518220 | 3.93E-128 | transposed | |
Bma04g00875 | Bma-Chr4:11518220 | Bma05g01176 | Bma-Chr5:50899001 | 5.19E-171 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g00875 | K06911 | - | mnt:21404588 | 484.567 |