Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma04g00881 | ATGGGTTTTCCGGTCGGGTATACGGAGGTGTTCTATCCCTACCTCTTTCTTCATCTACTTTCTCTTCTAGGATACATCAGAAGTCTCATTTCGTCTCTGTTTCACCTTCTGGGTCTCTCTGATTTCATCGAAACAGACGCCGTTTGGCCCGAAAGGCAGAGCCGAATCCCCGATACTCCCTCAGTTTCGGCGCTCCTGATTCGAGAATTGCTACCAGTCATCAAGTTTTCGGAGCTTACAGCAGTCTCCGGCGAAGCAGAGTCATCTGAGAGCTGCGCAGTTTGTCTCTACGAATTTGAAGATGGGGCGGAAATCAGAAGCTTAACAAACTGTATGCACATTTTTCACAGAGACTGTTTAGACCGCTGGATGGATCATGATCAGACAACATGTCCTCTTTGTAGGACGCCATTTTTGGCGGATGAGATGCAGAGAGAGTTCAATCAACGCCTGTGGGCCGCTACCGGAGCGTCATCTGATTTTTACGGTGAATACAGCTCGGTCTGA | 507 | 48.52 | MGFPVGYTEVFYPYLFLHLLSLLGYIRSLISSLFHLLGLSDFIETDAVWPERQSRIPDTPSVSALLIRELLPVIKFSELTAVSGEAESSESCAVCLYEFEDGAEIRSLTNCMHIFHRDCLDRWMDHDQTTCPLCRTPFLADEMQREFNQRLWAATGASSDFYGEYSSV | 168 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 11591658 | 11592164 | - | Bma019434.1 | Bma04g00881 | 81250 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma04g00881 | 168 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 166 | - | - | |
| Bma04g00881 | 168 | PANTHER | BRH1 RING FINGER PROTEIN | 1 | 166 | - | - | |
| Bma04g00881 | 168 | ProSiteProfiles | Zinc finger RING-type profile. | 92 | 135 | IPR001841 | - | |
| Bma04g00881 | 168 | SUPERFAMILY | RING/U-box | 83 | 142 | - | - | |
| Bma04g00881 | 168 | SMART | ringv_2 | 91 | 135 | IPR011016 | GO:0008270 | |
| Bma04g00881 | 168 | CDD | RING-H2 | 92 | 135 | - | - | |
| Bma04g00881 | 168 | Pfam | Ring finger domain | 91 | 135 | IPR001841 | - | |
| Bma04g00881 | 168 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 144 | IPR013083 | - | |
| Bma04g00881 | 168 | SMART | ring_2 | 92 | 134 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma04g00881 | Bma-Chr4:11591658 | Bma14g00604 | Bma-Chr14:6570856 | 3.10E-52 | dispersed | |
| Bma14g00093 | Bma-Chr14:1319497 | Bma04g00881 | Bma-Chr4:11591658 | 1.04E-15 | dispersed | |
| Bma04g00881 | Bma-Chr4:11591658 | Bma04g00888 | Bma-Chr4:11682113 | 7.73E-124 | proximal | |
| Bma04g00881 | Bma-Chr4:11591658 | Bma05g01183 | Bma-Chr5:50957905 | 1.16E-96 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma04g00881 | K16281 | - | cpap:110820950 | 263.077 |