Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00888 ATGGGTTTTCCGGTCGGGTATACGGAGGTGTTCTATCCCTACCTCTTTCTTCATCTACTTTCTCTTCTAGGATACATCAGAAGTCTCATTTCGTCTCTGTTTCACCTTCTGGGTCTCTCTGATTTCATCGAAACAGACGCCGTTTGGCCCGAAAGGCAGAGCCGAATCCCCGATACTCCCTCAGTTTCGGCGCTCCTGATTCGAGAATTGCTACCAGTCATCAAGTTTTCGGAGCTTACAGCAGTCTCCGGCGAAGCAGAGTCACCTGAGAGCTGCGCAGTTTGTCTCTACGAATTTGAAGATGGGGCGGAAATCAGAAGCTTAACAAACTGTATGCACATTTTTCACAGAGACTGTTTAGACCGCTGGATGGATCATGATCAGACAACATGTCCTCTTTGTAGGACGCCATTTTTGGCGGATGAGATGCAGAGAGAGTTCAATCAACGCCTGTGGGCCGCTACCGGAGCGTCATCTGATTTTTACGGTGAATACAGCTCGGTCTGA 507 48.72 MGFPVGYTEVFYPYLFLHLLSLLGYIRSLISSLFHLLGLSDFIETDAVWPERQSRIPDTPSVSALLIRELLPVIKFSELTAVSGEAESPESCAVCLYEFEDGAEIRSLTNCMHIFHRDCLDRWMDHDQTTCPLCRTPFLADEMQREFNQRLWAATGASSDFYGEYSSV 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11682113 11682619 + Bma019444.1 Bma04g00888 81257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00888 168 PANTHER BRH1 RING FINGER PROTEIN 1 166 - -
Bma04g00888 168 SUPERFAMILY RING/U-box 80 142 - -
Bma04g00888 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 139 IPR013083 -
Bma04g00888 168 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 166 - -
Bma04g00888 168 ProSiteProfiles Zinc finger RING-type profile. 92 135 IPR001841 -
Bma04g00888 168 SMART ringv_2 91 135 IPR011016 GO:0008270
Bma04g00888 168 CDD RING-H2 92 135 - -
Bma04g00888 168 Pfam Ring finger domain 91 135 IPR001841 -
Bma04g00888 168 SMART ring_2 92 134 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00888 Bma-Chr4:11682113 Bma05g01183 Bma-Chr5:50957905 9.73E-98 dispersed
Bma04g00881 Bma-Chr4:11591658 Bma04g00888 Bma-Chr4:11682113 7.73E-124 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00888 K16281 - cpap:110820950 266.159