Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00895 ATGGAAGATGATTGGGATCTGCAAGCGGTGGTTAGAGGCTACGCCGCCGCCACCATAACTAATTATTATTCAACTTCTTCCGCAGCTGTCTCTCATGGCTCCGACCAACCTCCTTCTAACTTCCTCTCTCATTCTCTCCCTTTTGAGCCGAGAAATGATATGGAGGAGTTGCAGCAGCTCTGCGACCCTTTCTTCCCCAAATCTCACACTCGCCTGGTTTCTCCTATCTCTGCTCATAACGTTCCAACGGAGCAGAAACAAGTCACCCAATTGCAGTCTCCACGATCCAAAAGACGGAAATATCAGCTGAAAAAAGTTTGTCGAGTTACAGCAGAGAGCCTTTCTTCCTCTGTATGGGCTTGGCGTAAGTATGGACAGAAGCCCATCAAAGGCTCTCCATATCCAAGAGGATATTACAGATGCAGCAGCTCAAAGGAGTGTCTAGCCCGGAAACAGGTGGAGCGGGACAGATCTGACTCGGGAATGTTCATAGTCACATACACGGCAGAGCACAATCATCCGGCGCCGACACACCGGAACTCGCTCGCCGGTTCGACCCGGCAGAAGCCTTCTACTTCGAAAACCGTCACTGGCGGCGAACAGAACAGAGCCCAAGCAACACAGCTTGATTGCTTTTCATCCTCTGCGGAAGACGGGGTTGTTCGCCGGAGCACAGAAACGGAAAGGAAGGGAGAAAAAGAATACTTACTAGAAGACGAAGAAGACGAACATGGGACGTGGGGAGATACTATGGCGGACGACGATTTCTTCGTGGGTTTGGAGGATCTCGACGATGACGACGCCGGAGACTATTTCCCAGAGAATTACTCGGAAGATCTAGGTCTTAGTTGGATACCCAACAATTCTACAACAGCCACCGGCGGTAGCTGA 891 50.73 MEDDWDLQAVVRGYAAATITNYYSTSSAAVSHGSDQPPSNFLSHSLPFEPRNDMEELQQLCDPFFPKSHTRLVSPISAHNVPTEQKQVTQLQSPRSKRRKYQLKKVCRVTAESLSSSVWAWRKYGQKPIKGSPYPRGYYRCSSSKECLARKQVERDRSDSGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPSTSKTVTGGEQNRAQATQLDCFSSSAEDGVVRRSTETERKGEKEYLLEDEEDEHGTWGDTMADDDFFVGLEDLDDDDAGDYFPENYSEDLGLSWIPNNSTTATGGS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11869179 11870239 + Bma019457.1 Bma04g00895 81264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00895 296 MobiDBLite consensus disorder prediction 171 249 - -
Bma04g00895 296 MobiDBLite consensus disorder prediction 221 237 - -
Bma04g00895 296 Pfam WRKY DNA -binding domain 119 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma04g00895 296 ProSiteProfiles WRKY domain profile. 110 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma04g00895 296 PANTHER WRKY TRANSCRIPTION FACTOR 22-LIKE 83 295 - -
Bma04g00895 296 SMART WRKY_cls 115 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma04g00895 296 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 83 295 IPR044810 GO:0003700
Bma04g00895 296 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 84 IPR044810 GO:0003700
Bma04g00895 296 Gene3D WRKY domain 99 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma04g00895 296 SUPERFAMILY WRKY DNA-binding domain 114 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma04g00895 296 PANTHER WRKY TRANSCRIPTION FACTOR 22-LIKE 1 84 - -
Bma04g00895 296 MobiDBLite consensus disorder prediction 173 220 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00895 Bma06g01183 CCT
Bma04g00895 Bma06g01183 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01606 Bma-Chr1:41617230 Bma04g00895 Bma-Chr4:11869179 5.28E-43 dispersed
Bma04g00895 Bma-Chr4:11869179 Bma06g01183 Bma-Chr6:48898016 3.12E-98 dispersed
Bma02g01066 Bma-Chr2:52363739 Bma04g00895 Bma-Chr4:11869179 5.65E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57204 PF03106 WRKY 2.80E-23 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00895 K13425 - rcu:8286686 270.011