Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00914 ATGAGCCAACCGACGCCTACCCAAGAATTAGTCGCCAAAGATCTTCACGGGTATGAGTGGAAATTTAAGCATATTTACAGAGGTCAACCGCGGAGGCATTTGCTCACTACCGGATGGAGTACTTTTGTGACTTCCAAGAGACTACTTGCCGGGGACGCCTTCGTGTTTTTAAGGGGCGATAATGGAGAGTTGAGAGTCGGTGTTTGTCGTCTTGCTCGACAACAGGCTCCGATGCCATCATCTGTGATATCCAGTCACAGCATGCATCTGGGAGTGCTTGCCACTGCATCTCATGCTTTTAGAACTCAGACCCTTTTTGTTGTCTATTACAAGCCAAGGACAAGCCAATTCATTATTGGCTTCAACAAATACCTAAACTCCATTAGGATCGGGTTTTCGATTGGGATGCGTTTTAAGATGCAGTTTGAAGCAGAGGAATCTTCGAAGAGAAGGTTCCCGGGAACTATTGTTGGCATTGGAGATGTTTCTCCTCAGTGGGCCGATTCCAAATGGCGATCGTTGAAGGTTCAATGGGATGAGCCTTCTACTATTCCAAGGCCAGAAAGGGTCTCTTGTTGGGAGATAGAACATTTTGTGCCGTCCTCTTCGTTAAACTTGAGTCAACCTGTGACGAAAAGTAAAAGGGTCCGACTAGTTGAGATTCCAACCTCGGAATTAACTTCTGGTTCTCATGCTTCGCCATTTCGGTATCATGGATCGACTCTTCCCAACGACATGCCCCAACTGCATAATATTGCCGAAGTCCATCCGAGACAGACTGAAGTCGATGCCAGTCTTTCTAATGACAGTAAATTTTATGGCTCGAAATCTCAACAAGAAGCTAACTGGCCATCTTCTCCTCATCTTAGTGTCTCTCTAAACCTTTTCACGAATTCGATAGATGACAAAGTATCTGACCAATCTCGATCAGTTCTCCCCGTCTATGTTTCTCCGACTTCACCGAATCCAAACAATGGCAGTCTTGTAAATAGTCAGTTGGATAATGACCATACATCAGATGGTTCTGTTTGCTGCCGTTTGTTTGGAATTGATTTGTCAAAGAAATCGAACGGCAGCTCAAATATGGAGAAACCTCCACCAAGCAAGGAGGTTAACAATTTGACGTGTAGAATTCGTACAAAGGTTCAAATGCAAGGCCACGCCGTTGGTCGTGCTGTCGACTTAGCAGCTCTGCAAGGATATGAACATCTTATAGATGAGCTTGAGAACATATTCGACATTAAAGGAGAGCTTCTTCCACAAGGCAAATGGGCAGTGGTCTTTACCGACAATGAGAATGACATGATGCTCGTGGGGGACGATCCATGGCCAGAATTCTGTAAAATGGTGAGAAAAATCTACATATTTTCGAGGGAAGAAGTCAAGAAGATGCGTTCGAATCTGGAGCATCCTCCATTATCGGCATCGTCTTCACTAGAATGTTGA 1446 44.81 MSQPTPTQELVAKDLHGYEWKFKHIYRGQPRRHLLTTGWSTFVTSKRLLAGDAFVFLRGDNGELRVGVCRLARQQAPMPSSVISSHSMHLGVLATASHAFRTQTLFVVYYKPRTSQFIIGFNKYLNSIRIGFSIGMRFKMQFEAEESSKRRFPGTIVGIGDVSPQWADSKWRSLKVQWDEPSTIPRPERVSCWEIEHFVPSSSLNLSQPVTKSKRVRLVEIPTSELTSGSHASPFRYHGSTLPNDMPQLHNIAEVHPRQTEVDASLSNDSKFYGSKSQQEANWPSSPHLSVSLNLFTNSIDDKVSDQSRSVLPVYVSPTSPNPNNGSLVNSQLDNDHTSDGSVCCRLFGIDLSKKSNGSSNMEKPPPSKEVNNLTCRIRTKVQMQGHAVGRAVDLAALQGYEHLIDELENIFDIKGELLPQGKWAVVFTDNENDMMLVGDDPWPEFCKMVRKIYIFSREEVKKMRSNLEHPPLSASSSLEC 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12549926 12552651 + Bma019479.1 Bma04g00914 81283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00914 481 Gene3D - 373 465 - -
Bma04g00914 481 Pfam AUX/IAA family 369 460 IPR033389 -
Bma04g00914 481 SUPERFAMILY CAD & PB1 domains 373 453 - -
Bma04g00914 481 Gene3D - 1 71 IPR015300 -
Bma04g00914 481 ProSiteProfiles B3 DNA-binding domain profile. 1 72 IPR003340 GO:0003677
Bma04g00914 481 CDD B3_DNA 4 70 IPR003340 GO:0003677
Bma04g00914 481 SUPERFAMILY DNA-binding pseudobarrel domain 2 99 IPR015300 -
Bma04g00914 481 PANTHER AUXIN RESPONSE FACTOR 11 1 358 - -
Bma04g00914 481 PANTHER AUXIN RESPONSE FACTOR 11 363 469 - -
Bma04g00914 481 ProSiteProfiles PB1 domain profile. 377 458 IPR000270 GO:0005515
Bma04g00914 481 Pfam Auxin response factor 96 175 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bma04g00914 481 Pfam B3 DNA binding domain 5 70 IPR003340 GO:0003677
Bma04g00914 481 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 363 469 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma04g00914 481 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 358 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma04g00914 481 Gene3D - 131 203 - -
Bma04g00914 481 SMART B3_2 1 72 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00914 Bma-Chr4:12549926 Bma15g00074 Bma-Chr15:857350 2.51E-129 dispersed
Bma04g00914 Bma-Chr4:12549926 Bma04g00238 Bma-Chr4:2055814 2.47E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57207 PF02309 AUX_IAA 2.20E-10 CL0072 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00914 K14486 - tcc:18613961 579.326