Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00927 ATGGGGAAGAAGGGAGGAACTTCGTGGTTGACTGCTGTGAAAAGGGCTTTTAGATCTCCTTCAAAAGACGACGAAGAGAAGAAGAAAGAGAAGAGAAGATGGATTTTCAGAAAATCAACGACTCATCATGAAGCCGAAGCCGTCGACCAGAAAACGCCATTAACAACGAAACTCGAAAAAGGCGCCATTAACAATGGGTCACTAGACTCAACTGCAGATCAAAAACACGCCCTTTCCATTGCAGTCGCCGCCGTCGAGGCGGCTGTTGCTACTGCACAGGCGGCCGCGGAGGAGGTGGCGCGGCTTACCAGACCAATTAATTATCACGCGAGAGAGCATCGCGCAGCCACCGTTATTCAAACTGCATTTCGAGGATATCTAGGAAGGAGAGCATTGCATGCGCTGAGGGGGATCGTGAAGTTGCAGGCTCTGGTGAGGGGCTACAACGTGAGGAAGCAAGCCAAGACGACGCTCAGGTGCATGCAGGCGCTGGTTAGAGTGCAGGCTCGAGTGCTGGACCAGCGACAGAGGCTCTCTCATGAAGGAAGCAGAAAATCTCAGTCCGCCATTAGCGACTTGAGCAGCGCTCTAGAATCGCAGTATCTGCAGGAAATCTGCGACAGAAAATCAGTTTCGCAGTCCCGAAATGGCAGCAGCATTGCAGATGATTGGGATGAGAGAGAAAGAACCATATCTCGCGCTTCTTCTCAACAGAAATGGAGGAGTGGAAGGAGCCCATCAATGGGAACGATGAAGAGTTTCAAGAAGGATCAAAATGGCTAA 783 50.83 MGKKGGTSWLTAVKRAFRSPSKDDEEKKKEKRRWIFRKSTTHHEAEAVDQKTPLTTKLEKGAINNGSLDSTADQKHALSIAVAAVEAAVATAQAAAEEVARLTRPINYHAREHRAATVIQTAFRGYLGRRALHALRGIVKLQALVRGYNVRKQAKTTLRCMQALVRVQARVLDQRQRLSHEGSRKSQSAISDLSSALESQYLQEICDRKSVSQSRNGSSIADDWDERERTISRASSQQKWRSGRSPSMGTMKSFKKDQNG 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12995086 12996542 - Bma019501.1 Bma04g00927 81296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00927 260 Pfam IQ calmodulin-binding motif 113 132 IPR000048 GO:0005515
Bma04g00927 260 Pfam IQ calmodulin-binding motif 136 155 IPR000048 GO:0005515
Bma04g00927 260 PANTHER IQ-DOMAIN 5-RELATED 1 232 - -
Bma04g00927 260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 157 IPR027417 -
Bma04g00927 260 MobiDBLite consensus disorder prediction 17 32 - -
Bma04g00927 260 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Bma04g00927 260 PANTHER IQ-DOMAIN 17 1 232 - -
Bma04g00927 260 MobiDBLite consensus disorder prediction 213 260 - -
Bma04g00927 260 SMART iq_5 111 133 IPR000048 GO:0005515
Bma04g00927 260 SMART iq_5 134 155 IPR000048 GO:0005515
Bma04g00927 260 MobiDBLite consensus disorder prediction 220 234 - -
Bma04g00927 260 Gene3D - 109 164 - -
Bma04g00927 260 MobiDBLite consensus disorder prediction 1 32 - -
Bma04g00927 260 MobiDBLite consensus disorder prediction 235 260 - -
Bma04g00927 260 ProSiteProfiles IQ motif profile. 136 163 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00927 - - - pxb:103956367 272.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00927 Bma-Chr4:12995086 Bma02g01259 Bma-Chr2:54615161 6.36E-49 dispersed
Bma04g00927 Bma-Chr4:12995086 Bma07g01423 Bma-Chr7:50036173 4.58E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g624 . . . . . . Bma04g00927 . . Cmo17g00478 . . . . . . . . . . . . . . . . . . . . . . . Cone11ag0521 Cone18ag0985 . . . . . . . . . Bpe04g00965 . . . . . . Cma17g00507 . Car17g00469 . Cpe12g00436 . . . . . . . Cla06g00255 Cam06g0278 Cec06g0277 Cco06g0276 Clacu06g0268 Cmu06g0268 Cre06g1039 . . . Cme11g02263
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g01643 . 47 376 IQD Protein Family AT5G03040 57.2 3.0e-87 319.3
Bma10g00020 . 1 238 IQD Protein Family AT5G03040 56.3 1.1e-57 221.1
Bma08g00947 CCT,ECH 1 469 IQD Protein Family AT3G52290 51.2 1.1e-91 334.0
Bma07g01423 BCT,CCT 1 387 IQD Protein Family AT3G22190 58.7 2.0e-98 356.3
Bma14g00379 BCT,CCT 1 391 IQD Protein Family AT3G22190 55.0 5.2e-86 315.1
Bma01g02209 . 1 433 IQD Protein Family AT2G26180 57.3 1.2e-114 410.2
Bma11g01010 . 1 274 IQD Protein Family AT2G33990 52.6 8.6e-63 237.3
Bma10g00484 . 1 133 IQD Protein Family AT3G15050 63.2 6.7e-44 174.5
Bma02g01259 . 247 675 IQD Protein Family AT4G00820 57.3 2.6e-106 382.9
Bma04g00927 . 1 231 IQD Protein Family AT4G00820 57.3 3.6e-52 203.0
Bma02g01259 . 254 675 IQD Protein Family AT1G01110 55.1 1.3e-102 370.5
Bma04g00927 . 1 231 IQD Protein Family AT1G01110 53.1 8.8e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00927 Bma_Chr04 FPKM 4.510235 4.439347 0.091076 0.222716 0.086936 0.0 0.0 0.0 0.0 0.0