Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00935 ATGGATTTTGTGCCAAAAGCAAAAGGGTATTCTGATAGAGAGGAGGAAGAGGAAGAAGAAGAGGTAAAAAGTAGTTCTTCTGCTTGCAAGCTTCCATTTTCTCCAGGCTCTTCATCTTCTCCTTCTGTATATAAGCTATGGCTAGGGAATAGTGAGCCTAAAGAGAAAGCTTCAAGATCTTATTGTATGAATGAACTTCCTTCACCCGAAACCACCATTAACAGCCACGAGAAGCTTGAGTCCATAGACTTATCGTTGCGAATCGACAGCGACATGGGCGGGGATGTCAATGGAGCTCGAAGCTATGGCCATAGAGGTTGCAGCGAAAGAGAACACATGTTTGATAAAGTAGTGACTCCCAGCGATGTTGGAAAGCTAAATCGTTTAGTAATTCCGAAGCAACACGCAGAGAAATACTTCCCCATCGATTCTTCAACAAATGAAAAGGGTTTGATTCTGAATTTTGAAGATAGAGACGGAAAATCATGGCGGTTTCGTTACTCTTACTGGAACAGTAGCCAGAGCTACGTGATGACAAAAGGATGGAGTAGGTTTGTGAAGGAGAAGAAGCTAGACGCTGGGGATGTCGTTTCTTTCGAACGGGGAGTGGGAGAGGTTGGAAAGCACCGTCTCTTCATAGATTGGCGGCGCCGCCCAGATGCGCCACCGAATCTGGCGTCGCTCGTTCATCTTCCTCAGTCTATGAGATGGGGTAGTAGACAGTTGATTCCTCCATCAATGGCGACGCCTTATCCTCATCCGTACCGCCATTTTCAAAACCTTAATTACGGTACGATCAATCCGTCTTACTATCAGAGAGGAGCTTCCGACTACTTCAATGGAGGAAGCTTCGAATCGGGTTCTGTTTATTACTTAAGGCCGTCTTCTTCTTACGCCATCGGAGCACTGCAACAAGGTGGGGAAGCTGCTCCAATGGTGATCGATTCAGTACCAGTAGCCCACCAAGGAAAAGCTAAACCTAAACGCCTAAGACTGTTTGGTGTGAATTTGGAGTGTCCAGTACCAGAAGAACCCATCAGTAATCCTCATTTCGCAAGCTCCTCTTCGGTTCCTTATGTTCAATTGCAGCCGCCATTTTCAACTGAGTTCTCAGCAAGAGGAAAAGGTTCGTCCTCGTTCGATTGGAATCTGCCATGA 1158 46.11 MDFVPKAKGYSDREEEEEEEEVKSSSSACKLPFSPGSSSSPSVYKLWLGNSEPKEKASRSYCMNELPSPETTINSHEKLESIDLSLRIDSDMGGDVNGARSYGHRGCSEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPIDSSTNEKGLILNFEDRDGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFERGVGEVGKHRLFIDWRRRPDAPPNLASLVHLPQSMRWGSRQLIPPSMATPYPHPYRHFQNLNYGTINPSYYQRGASDYFNGGSFESGSVYYLRPSSSYAIGALQQGGEAAPMVIDSVPVAHQGKAKPKRLRLFGVNLECPVPEEPISNPHFASSSSVPYVQLQPPFSTEFSARGKGSSSFDWNLP 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13347376 13348533 + Bma019511.1 Bma04g00935 81304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00935 385 MobiDBLite consensus disorder prediction 27 45 - -
Bma04g00935 385 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 84 355 IPR044800 GO:0003700
Bma04g00935 385 ProSiteProfiles B3 DNA-binding domain profile. 114 219 IPR003340 GO:0003677
Bma04g00935 385 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 84 355 - -
Bma04g00935 385 CDD B3_DNA 112 201 IPR003340 GO:0003677
Bma04g00935 385 Gene3D - 107 224 IPR015300 -
Bma04g00935 385 Pfam B3 DNA binding domain 114 218 IPR003340 GO:0003677
Bma04g00935 385 SMART B3_2 114 219 IPR003340 GO:0003677
Bma04g00935 385 SUPERFAMILY DNA-binding pseudobarrel domain 110 220 IPR015300 -
Bma04g00935 385 MobiDBLite consensus disorder prediction 1 45 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00935 Bma06g01360 CCT
Bma04g00935 Bma06g01360 ECH
Bma04g00935 Bma05g01206 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00935 Bma-Chr4:13347376 Bma14g00089 Bma-Chr14:1257805 9.53E-96 dispersed
Bma06g01360 Bma-Chr6:50471857 Bma04g00935 Bma-Chr4:13347376 8.83E-63 transposed
Bma04g00935 Bma-Chr4:13347376 Bma05g01206 Bma-Chr5:51476001 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57211 PF02362 B3 5.10E-30 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00935 - - vvi:100259130 370.933