Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g00935 | ATGGATTTTGTGCCAAAAGCAAAAGGGTATTCTGATAGAGAGGAGGAAGAGGAAGAAGAAGAGGTAAAAAGTAGTTCTTCTGCTTGCAAGCTTCCATTTTCTCCAGGCTCTTCATCTTCTCCTTCTGTATATAAGCTATGGCTAGGGAATAGTGAGCCTAAAGAGAAAGCTTCAAGATCTTATTGTATGAATGAACTTCCTTCACCCGAAACCACCATTAACAGCCACGAGAAGCTTGAGTCCATAGACTTATCGTTGCGAATCGACAGCGACATGGGCGGGGATGTCAATGGAGCTCGAAGCTATGGCCATAGAGGTTGCAGCGAAAGAGAACACATGTTTGATAAAGTAGTGACTCCCAGCGATGTTGGAAAGCTAAATCGTTTAGTAATTCCGAAGCAACACGCAGAGAAATACTTCCCCATCGATTCTTCAACAAATGAAAAGGGTTTGATTCTGAATTTTGAAGATAGAGACGGAAAATCATGGCGGTTTCGTTACTCTTACTGGAACAGTAGCCAGAGCTACGTGATGACAAAAGGATGGAGTAGGTTTGTGAAGGAGAAGAAGCTAGACGCTGGGGATGTCGTTTCTTTCGAACGGGGAGTGGGAGAGGTTGGAAAGCACCGTCTCTTCATAGATTGGCGGCGCCGCCCAGATGCGCCACCGAATCTGGCGTCGCTCGTTCATCTTCCTCAGTCTATGAGATGGGGTAGTAGACAGTTGATTCCTCCATCAATGGCGACGCCTTATCCTCATCCGTACCGCCATTTTCAAAACCTTAATTACGGTACGATCAATCCGTCTTACTATCAGAGAGGAGCTTCCGACTACTTCAATGGAGGAAGCTTCGAATCGGGTTCTGTTTATTACTTAAGGCCGTCTTCTTCTTACGCCATCGGAGCACTGCAACAAGGTGGGGAAGCTGCTCCAATGGTGATCGATTCAGTACCAGTAGCCCACCAAGGAAAAGCTAAACCTAAACGCCTAAGACTGTTTGGTGTGAATTTGGAGTGTCCAGTACCAGAAGAACCCATCAGTAATCCTCATTTCGCAAGCTCCTCTTCGGTTCCTTATGTTCAATTGCAGCCGCCATTTTCAACTGAGTTCTCAGCAAGAGGAAAAGGTTCGTCCTCGTTCGATTGGAATCTGCCATGA | 1158 | 46.11 | MDFVPKAKGYSDREEEEEEEEVKSSSSACKLPFSPGSSSSPSVYKLWLGNSEPKEKASRSYCMNELPSPETTINSHEKLESIDLSLRIDSDMGGDVNGARSYGHRGCSEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPIDSSTNEKGLILNFEDRDGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFERGVGEVGKHRLFIDWRRRPDAPPNLASLVHLPQSMRWGSRQLIPPSMATPYPHPYRHFQNLNYGTINPSYYQRGASDYFNGGSFESGSVYYLRPSSSYAIGALQQGGEAAPMVIDSVPVAHQGKAKPKRLRLFGVNLECPVPEEPISNPHFASSSSVPYVQLQPPFSTEFSARGKGSSSFDWNLP | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 13347376 | 13348533 | + | Bma019511.1 | Bma04g00935 | 81304 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g00935 | 385 | MobiDBLite | consensus disorder prediction | 27 | 45 | - | - | |
Bma04g00935 | 385 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 84 | 355 | IPR044800 | GO:0003700 | |
Bma04g00935 | 385 | ProSiteProfiles | B3 DNA-binding domain profile. | 114 | 219 | IPR003340 | GO:0003677 | |
Bma04g00935 | 385 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 84 | 355 | - | - | |
Bma04g00935 | 385 | CDD | B3_DNA | 112 | 201 | IPR003340 | GO:0003677 | |
Bma04g00935 | 385 | Gene3D | - | 107 | 224 | IPR015300 | - | |
Bma04g00935 | 385 | Pfam | B3 DNA binding domain | 114 | 218 | IPR003340 | GO:0003677 | |
Bma04g00935 | 385 | SMART | B3_2 | 114 | 219 | IPR003340 | GO:0003677 | |
Bma04g00935 | 385 | SUPERFAMILY | DNA-binding pseudobarrel domain | 110 | 220 | IPR015300 | - | |
Bma04g00935 | 385 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma04g00935 | Bma06g01360 | CCT | |
Bma04g00935 | Bma06g01360 | ECH | |
Bma04g00935 | Bma05g01206 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g00935 | Bma-Chr4:13347376 | Bma14g00089 | Bma-Chr14:1257805 | 9.53E-96 | dispersed | |
Bma06g01360 | Bma-Chr6:50471857 | Bma04g00935 | Bma-Chr4:13347376 | 8.83E-63 | transposed | |
Bma04g00935 | Bma-Chr4:13347376 | Bma05g01206 | Bma-Chr5:51476001 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57211 | PF02362 | B3 | 5.10E-30 | CL0405 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g00935 | - | - | vvi:100259130 | 370.933 |