Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00955 ATGTTCAAGACTTGTAGCGCTCAGAAAGAGTTAAGAAAAGCTCCAGCTGACTTCTTGAATGAAGATGGGAAGAAGAAAAAGAAGAAGAAAGCAATTGAAAATAGTGGTGCGAAACATCCAACATACAAAGGAGTGAGGATGAGAAAGTGGGGAAGATGGGTTTCTGAAATCAGAGAGCCAAAAAAAAAATCTAGAATTTGGCTAGGAACTTACTCAACTGCAGAAATGGCGGCTCGAGCCCATGATGTAGCAGCTCTGGCTATTAAAGGTCGCTCAGCTCACCTCAATTTCCCCGAACTTGAACCGAAACTCCATCGCCCTCCCTCGACCTCTCATAAAGACATTCAGGCCGCCGCCGCACAAGCCGCTGCCACCACGTTTATATCGACAGAACAATCTGACGAGCTTTCTACGGTGAACCCAGAAAGCTCACAGTCATCTTCTCAAAACAACGAAGACGACGCCTTGTTTGACCTACCCGATTTGTTCGCAAACGGGGCGGATCTAAATGACAGCTTTTTCTTCCGTTCTTCTTCTTCTTCATGGCAATTATGTGAAGCAGATTCTTGCTTCCTGCTAGAGGAGCCATATCCATGGGAGCATTGCTAA 609 45.81 MFKTCSAQKELRKAPADFLNEDGKKKKKKKAIENSGAKHPTYKGVRMRKWGRWVSEIREPKKKSRIWLGTYSTAEMAARAHDVAALAIKGRSAHLNFPELEPKLHRPPSTSHKDIQAAAAQAAATTFISTEQSDELSTVNPESSQSSSQNNEDDALFDLPDLFANGADLNDSFFFRSSSSSWQLCEADSCFLLEEPYPWEHC 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14515727 14516335 + Bma019543.1 Bma04g00955 81324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00955 202 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Bma04g00955 202 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Bma04g00955 202 MobiDBLite consensus disorder prediction 131 151 - -
Bma04g00955 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 24 184 - -
Bma04g00955 202 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
Bma04g00955 202 CDD AP2 42 100 IPR001471 GO:0003700|GO:0006355
Bma04g00955 202 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Bma04g00955 202 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Bma04g00955 202 MobiDBLite consensus disorder prediction 16 40 - -
Bma04g00955 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 24 184 - -
Bma04g00955 202 Pfam AP2 domain 40 90 IPR001471 GO:0003700|GO:0006355
Bma04g00955 202 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00955 Bma-Chr4:14515727 Bma05g00749 Bma-Chr5:43958112 2.28E-44 dispersed
Bma04g00955 Bma-Chr4:14515727 Bma05g01217 Bma-Chr5:51580210 1.51E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57212 PF00847 AP2 4.20E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00955 - - pvy:116117681 202.986