Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00965 ATGGATTTGTACGGAATTCCCTCCGTTTCATCAGACTGTTTCGCCATTGACGACCTCCTTGACGTCCCCAAAGATGAATTCTTCTCCACTTCCTCCTACGCTTCTTCCACCATTTCTTCTGCTGATCTCCGTCGCACCCACTCTCCTTTACCCTCGATTCCTTTTGCCGCCCACAATCCGACCCTGTTTTCTACTCACTTTGATTTCACCGACGGCCTTTACGTCCCTAACGACGAGGTGGCGGAGCTCGAATGGCTTTCCCAGTTCGTTGATGATTCTTTTTCCGACTTCAACTTCAAGGAAGGAACCGGAGAAAAATCTCTCCAACCGGAAAATTCATCATCATCCGGTAAAACACGACGAAAGGGCTCAGGAGCGTTGTCTGTCCAGGTGATCTCGCCAGAGCCGGAACCAATGTCCACCGTAAAGCTCAAATCCAGAACAGAAACTGTCCCGAAGAACTTTTCGTTTGCTTCTACATGTTCCTCGATGATAAAAAACTCGCCGGGAGGCCGAAAATGCAGCCACTGTTCGTCGGAGAAGACGCCGCAATGGCGAACAGGCCCACTAGGACCGAAAACACTGTGCAATGCCTGCGGTGTGCGGTTCAAGTCGGGTCGACTCGTACCCGAATATAGACCCGCAGCAAGCCCAACTTTTGTGCTCACCCAGCACTCAAACTCTCACCGGAAAGTTCTGGAGCTCCGCCGCCAAAAAGAGCTCTCAAGGCAGCAACCGCCACAGCAGATGGAGGAGAAATTCTATGCTCAAGCGCACGACTTCCAAGTTTGCTGA 795 51.45 MDLYGIPSVSSDCFAIDDLLDVPKDEFFSTSSYASSTISSADLRRTHSPLPSIPFAAHNPTLFSTHFDFTDGLYVPNDEVAELEWLSQFVDDSFSDFNFKEGTGEKSLQPENSSSSGKTRRKGSGALSVQVISPEPEPMSTVKLKSRTETVPKNFSFASTCSSMIKNSPGGRKCSHCSSEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTQHSNSHRKVLELRRQKELSRQQPPQQMEEKFYAQAHDFQVC 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15126531 15127453 + Bma019558.1 Bma04g00965 81334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00965 264 MobiDBLite consensus disorder prediction 101 137 - -
Bma04g00965 264 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 170 231 - -
Bma04g00965 264 SMART GATA_3 168 218 IPR000679 GO:0006355|GO:0043565
Bma04g00965 264 PANTHER GATA TRANSCRIPTION FACTOR 1 264 - -
Bma04g00965 264 MobiDBLite consensus disorder prediction 101 123 - -
Bma04g00965 264 PANTHER GATA TRANSCRIPTION FACTOR 1 264 - -
Bma04g00965 264 Pfam GATA zinc finger 174 207 IPR000679 GO:0006355|GO:0043565
Bma04g00965 264 Gene3D - 170 255 IPR013088 GO:0006355|GO:0008270
Bma04g00965 264 ProSiteProfiles GATA-type zinc finger domain profile. 168 204 IPR000679 GO:0006355|GO:0043565
Bma04g00965 264 CDD ZnF_GATA 173 220 IPR000679 GO:0006355|GO:0043565
Bma04g00965 264 ProSitePatterns GATA-type zinc finger domain. 174 199 IPR000679 GO:0006355|GO:0043565
Bma04g00965 264 PIRSF Txn_fac_GATA_plant 1 262 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00965 Bma-Chr4:15126531 Bma15g00355 Bma-Chr15:3793448 1.28E-49 dispersed
Bma04g00965 Bma-Chr4:15126531 Bma07g00151 Bma-Chr7:2141208 1.51E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57214 PF00320 GATA 9.50E-16 CL0167 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00965 - - vri:117931666 244.973