Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00965 ATGGATTTGTACGGAATTCCCTCCGTTTCATCAGACTGTTTCGCCATTGACGACCTCCTTGACGTCCCCAAAGATGAATTCTTCTCCACTTCCTCCTACGCTTCTTCCACCATTTCTTCTGCTGATCTCCGTCGCACCCACTCTCCTTTACCCTCGATTCCTTTTGCCGCCCACAATCCGACCCTGTTTTCTACTCACTTTGATTTCACCGACGGCCTTTACGTCCCTAACGACGAGGTGGCGGAGCTCGAATGGCTTTCCCAGTTCGTTGATGATTCTTTTTCCGACTTCAACTTCAAGGAAGGAACCGGAGAAAAATCTCTCCAACCGGAAAATTCATCATCATCCGGTAAAACACGACGAAAGGGCTCAGGAGCGTTGTCTGTCCAGGTGATCTCGCCAGAGCCGGAACCAATGTCCACCGTAAAGCTCAAATCCAGAACAGAAACTGTCCCGAAGAACTTTTCGTTTGCTTCTACATGTTCCTCGATGATAAAAAACTCGCCGGGAGGCCGAAAATGCAGCCACTGTTCGTCGGAGAAGACGCCGCAATGGCGAACAGGCCCACTAGGACCGAAAACACTGTGCAATGCCTGCGGTGTGCGGTTCAAGTCGGGTCGACTCGTACCCGAATATAGACCCGCAGCAAGCCCAACTTTTGTGCTCACCCAGCACTCAAACTCTCACCGGAAAGTTCTGGAGCTCCGCCGCCAAAAAGAGCTCTCAAGGCAGCAACCGCCACAGCAGATGGAGGAGAAATTCTATGCTCAAGCGCACGACTTCCAAGTTTGCTGA 795 51.45 MDLYGIPSVSSDCFAIDDLLDVPKDEFFSTSSYASSTISSADLRRTHSPLPSIPFAAHNPTLFSTHFDFTDGLYVPNDEVAELEWLSQFVDDSFSDFNFKEGTGEKSLQPENSSSSGKTRRKGSGALSVQVISPEPEPMSTVKLKSRTETVPKNFSFASTCSSMIKNSPGGRKCSHCSSEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTQHSNSHRKVLELRRQKELSRQQPPQQMEEKFYAQAHDFQVC 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15126531 15127453 + Bma019558.1 Bma04g00965 81334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00965 264 MobiDBLite consensus disorder prediction 101 137 - -
Bma04g00965 264 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 170 231 - -
Bma04g00965 264 SMART GATA_3 168 218 IPR000679 GO:0006355|GO:0043565
Bma04g00965 264 PANTHER GATA TRANSCRIPTION FACTOR 1 264 - -
Bma04g00965 264 MobiDBLite consensus disorder prediction 101 123 - -
Bma04g00965 264 PANTHER GATA TRANSCRIPTION FACTOR 1 264 - -
Bma04g00965 264 Pfam GATA zinc finger 174 207 IPR000679 GO:0006355|GO:0043565
Bma04g00965 264 Gene3D - 170 255 IPR013088 GO:0006355|GO:0008270
Bma04g00965 264 ProSiteProfiles GATA-type zinc finger domain profile. 168 204 IPR000679 GO:0006355|GO:0043565
Bma04g00965 264 CDD ZnF_GATA 173 220 IPR000679 GO:0006355|GO:0043565
Bma04g00965 264 ProSitePatterns GATA-type zinc finger domain. 174 199 IPR000679 GO:0006355|GO:0043565
Bma04g00965 264 PIRSF Txn_fac_GATA_plant 1 262 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00965 - - - vri:117931666 244.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00965 Bma-Chr4:15126531 Bma15g00355 Bma-Chr15:3793448 1.28E-49 dispersed
Bma04g00965 Bma-Chr4:15126531 Bma07g00151 Bma-Chr7:2141208 1.51E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g383 Blo01g00314 . Bda03g01053 Bda08g00019 . Bpe05g01125 Bma04g00965 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0515 Cone15ag0541 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g00965 . 1 240 C2C2-Gata Transcription Factor Family AT3G60530 52.9 3.3e-53 205.3
Bma03g00976 . 2 172 C2C2-Gata Transcription Factor Family AT5G66320 56.6 2.4e-41 166.4
Bma03g00976 . 8 173 C2C2-Gata Transcription Factor Family AT3G51080 59.3 9.2e-40 161.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018084 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57214 PF00320 GATA 9.50E-16 CL0167 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00965 Bma_Chr04 FPKM 1.021251 1.672951 1.296445 1.562713 1.446859 1.734741 1.931613 1.666649 1.567339 1.429853