Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00970 ATGGGAGAAATCGAGGACCCATCTCTAGAACTGAACAAGCTTTTGCAAAATGCGAATGGTCCTCAGCAAGGTCTAGAATTCACTGCTAATTTTGGCGCTTTGGATCAGAGTTTCATTTTCGAACCGAGCGGCGGCTCTTCTGGTTTGGTCAGTAACATTGATTCATCTTTACAAGGACCGATTTGTTCTGAATTTTTCTTGCATAATCAAAATGTTCCTGCCAACAACAATTCTAGGTTTGGTTTGATTTCCAATCCCAATTTTCTTTGCCCGGCTGGGTTTCAATTTCAGCCGCAAATGATTGGAAATGCAGAGGAAAAGCCACAAAATTTGAATACCCAGTTGTTAATGAGCCACAATCAAGCTCATTTCGAACAGCATCCAGCCATGTATATGCCTCCTCCGGCCAAGCGTCTCAATTCTGGGGCTACCGGACCCAACTTTCAGCTGTCGCAGGTTCAGTTGTTTCCTCACCATCTTCAACAGAGGCCGAAAATGGTGGGTTCAAAGTTGAATACGGTGGCCGACGATGGGTCAAACCAGCATGGAATAGTGGACCAGCTTTTCCAAGCGGCGGAGCTGATCGAAATCGGAAATCCTGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACCAACTATCTCCCGTTGGTAAGCCTTTTCAAAGGGCTGCTTTTTATTTCAAAGAGGCTTTACTGGTACTCCTCAATATGACCACCTCAAACTCTTCAATTCTGTCTCCTTTAAGCCTCGTTTTCAAAATCGGAGCTTACAAATCGTATTCGGACATCTCTCCTGTTCTTCACTTTGCGAATTTCACTTCCAACCAAGCAATTCTCGAAGCCCTTGACGGATTCGATCGAATACATTTGGTAGATTTCGACATCGGCCATGGTGGGCAATGGGCTTCTTTTATGCAAGAATTAGCTTTGAGAAATGGAGGATCCCCATTTCTCAAAATCACTGCCTTTGCCTCTTCCTTCAATGAATTCGAGCTAAGTTTCACTCAAGGAAACCTTCAACTGTTTGCCAACGATCTGAATATTGCTCTTGAAATTGAAATACTCAGCCTTGAATCCTTAAACTCTGGGTCTTTCCCATTGTCTCTCCATCTATCTGACATTAACGCCATTGCAGTGAACCTCCCAGCTTCGCCATTTTCCGGCTTGCCGTTGCCTCTGATTCTCCGCTTTATAAAACATTTATCACCCAAAATTATAGTCTCTTTAAATCTTGGCTTGGATCAATCCGATGTTTCATTTCCCCAACAGATCATTAGTGCCCATGAATACTACTGCGGTCTGCTTGAATCACTGGATGCCTTGAACATAAACCTTGATCTTCAACACAAGATAGAGAGGTTCTTGCTCCAACCAACAATGGAGAAAATTGTATTGGGTCGTCATCATTTGTCTGAACGGCAACCACTTTCATGGAGGAGCCTGTTTTTATCATCTGGATTCTCCCCATGGATGTTCAGTAACTTCACCGAGTCTCAAGCTGATTGTTTAATCCAGAGAGCTCCCGTGAGGGGTTTTCACGTCGAGAAAAGGCAGTCCTCGATCGTTCTCTACTGGCAGCAGAAGGAACTAATCTCTGCCTCTGCATGGCGGTGCTGA 1620 44.57 MGEIEDPSLELNKLLQNANGPQQGLEFTANFGALDQSFIFEPSGGSSGLVSNIDSSLQGPICSEFFLHNQNVPANNNSRFGLISNPNFLCPAGFQFQPQMIGNAEEKPQNLNTQLLMSHNQAHFEQHPAMYMPPPAKRLNSGATGPNFQLSQVQLFPHHLQQRPKMVGSKLNTVADDGSNQHGIVDQLFQAAELIEIGNPVLAQGILARLNHQLSPVGKPFQRAAFYFKEALLVLLNMTTSNSSILSPLSLVFKIGAYKSYSDISPVLHFANFTSNQAILEALDGFDRIHLVDFDIGHGGQWASFMQELALRNGGSPFLKITAFASSFNEFELSFTQGNLQLFANDLNIALEIEILSLESLNSGSFPLSLHLSDINAIAVNLPASPFSGLPLPLILRFIKHLSPKIIVSLNLGLDQSDVSFPQQIISAHEYYCGLLESLDALNINLDLQHKIERFLLQPTMEKIVLGRHHLSERQPLSWRSLFLSSGFSPWMFSNFTESQADCLIQRAPVRGFHVEKRQSSIVLYWQQKELISASAWRC 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15418176 15419795 - Bma019567.1 Bma04g00970 81339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00970 539 ProSiteProfiles GRAS family profile. 175 538 IPR005202 -
Bma04g00970 539 PANTHER SCARECROW-LIKE PROTEIN 6 1 538 - -
Bma04g00970 539 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 538 IPR005202 -
Bma04g00970 539 Pfam GRAS domain family 185 538 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00970 Bma06g01388 CCT
Bma02g01017 Bma04g00970 CCT
Bma04g00970 Bma05g01129 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00970 Bma-Chr4:15418176 Bma02g01308 Bma-Chr2:55213484 2.99E-33 dispersed
Bma02g01017 Bma-Chr2:51424801 Bma04g00970 Bma-Chr4:15418176 0 wgd
Bma04g00970 Bma-Chr4:15418176 Bma05g01229 Bma-Chr5:51702408 0 wgd
Bma04g00970 Bma-Chr4:15418176 Bma06g01388 Bma-Chr6:50649024 1.83E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57215 PF03514 GRAS 4.00E-82 CL0063 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00970 - - zju:107424189 590.882