Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00989 ATGGAGAGGAGGTTTTTGATGAATGAGGAGTGCGATCCCGCTCCAATTACCTGGAATTTCCCATCGTTTGCCATGAAAATCCCCAAAAATGACCCGAATTATAAGTTTGATCAGCTTCAGAGTGGTTTTTTCTGGCCAAATTCAGTGGAACAGAGTGATCCTCTTGACCCTGCTTTAGGCTCCATTCTTAGTTCCCCGGCAGGGTCAAATGTCGGCTCTGCAGTTAACTCCGTCGGAGATAAACTAATGATTAGGGAACAAATCGGAAGGCTGGGAAGCTGTTGCGAACCCGGCGACATTCTGACACCGGCGTACGTTGGGGGAAATAATGAAAGCAACAACTATTCGTCTTGCAGTACGCCATTAAATTCCCCGCCGAAGCTTAATCTATCAGTGGAAAATCCAGACATCAAAGGCAATTCGTCAGTTTATGAAAGGAATTTTCCAGTTTATCCTAGGTCGAAGCTCTTTAGCTCTGACCCTGAGATCGCAAAGAGAGCTGCTGGGTTTTCATGCTTTGCCGCTAGAAATGGAGTGCCAGGTAAACAGATTTCAACGATTCGTGAGTTTGAATCTCAAATTGATGAAGATCAAGAGCGAAGAAAAAGCTCGATTGAGTTCAGGACTTCACTTTCTAGTAAGAAATCGAGAAAGCAATCGAGCTCTCCTACCAGTGAAACTGCAGAGAGAGGCGATTCTCGAGAGGTATCCTCCTTGTTTCAGCAAATTTCCTACTGCGAAACAGCCATGAAAGAAAAAGATGAAGTTGATCCCAACAACAGAAAAAGGAAATCAAGTTCAAAGGTAAAATCAGAAGAAGCCCCCTCTGGTAAAATCGCCAAGATTGAAGGAAAAAACGAGGAATCAAATCCAGATGATGGAACGAAGACGAAGAAAGAAGCAAATGAAGGTACAAAATCCGGAGAAGATGAAAACCAGAAGAACGCAAAGCTTCCAGAACTTCCAAAGGATTATATCCATGTTCGAGCAAGAAGAGGTCAAGCTACAGATAGCCATAGCCTGGCCGAGAGAGTAAGAAGAGAAAAAATCAGCGAAAGGATGAAGTTCCTTCAAGATCTTGTTCCTGGGTGCAACAAGGGGACTAAAAAAGCAGTGGTGCTTGACGAAATTATAAACTATGTTCAATCATTGCAGCGGCAGGTCGAGTGTCTTTCAATGAAGCTGGCATCAGTTAATCCGAGGATGAATTTAAACATGGCTGCTCTTTTGTCCAAGGATGTAAGATGA 1248 43.51 MERRFLMNEECDPAPITWNFPSFAMKIPKNDPNYKFDQLQSGFFWPNSVEQSDPLDPALGSILSSPAGSNVGSAVNSVGDKLMIREQIGRLGSCCEPGDILTPAYVGGNNESNNYSSCSTPLNSPPKLNLSVENPDIKGNSSVYERNFPVYPRSKLFSSDPEIAKRAAGFSCFAARNGVPGKQISTIREFESQIDEDQERRKSSIEFRTSLSSKKSRKQSSSPTSETAERGDSREVSSLFQQISYCETAMKEKDEVDPNNRKRKSSSKVKSEEAPSGKIAKIEGKNEESNPDDGTKTKKEANEGTKSGEDENQKNAKLPELPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKGTKKAVVLDEIINYVQSLQRQVECLSMKLASVNPRMNLNMAALLSKDVR 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15919755 15921370 - Bma019594.1 Bma04g00989 81358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00989 415 Pfam Helix-loop-helix DNA-binding domain 338 385 IPR011598 GO:0046983
Bma04g00989 415 PANTHER TRANSCRIPTION FACTOR BHLH63 84 413 - -
Bma04g00989 415 MobiDBLite consensus disorder prediction 192 237 - -
Bma04g00989 415 Coils Coil 411 415 - -
Bma04g00989 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 384 IPR011598 GO:0046983
Bma04g00989 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 403 IPR036638 GO:0046983
Bma04g00989 415 MobiDBLite consensus disorder prediction 192 213 - -
Bma04g00989 415 MobiDBLite consensus disorder prediction 249 322 - -
Bma04g00989 415 CDD bHLH_AtBPE_like 324 409 - -
Bma04g00989 415 Gene3D - 331 406 IPR036638 GO:0046983
Bma04g00989 415 SMART finulus 340 390 IPR011598 GO:0046983
Bma04g00989 415 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 84 413 IPR024097 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00989 Bma-Chr4:15919755 Bma15g00648 Bma-Chr15:9352134 3.02E-62 dispersed
Bma09g00469 Bma-Chr9:39247400 Bma04g00989 Bma-Chr4:15919755 1.15E-12 dispersed
Bma04g00989 Bma-Chr4:15919755 Bma05g01223 Bma-Chr5:51635572 5.43E-176 wgd
Bma04g00989 Bma-Chr4:15919755 Bma06g01401 Bma-Chr6:50785189 5.50E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57217 PF00010 HLH 5.30E-07 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00989 - - tcc:18602600 336.265