Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00994 ATGTCCTTCCAGCAGCAACAGGTTGAGGAATTTGATTACATGAGGGAGGAAAGTGGAATGGGGGATCTAAACCATGAAATGGATGGAGAAGCAACTGTTGATGAAGAAAATGATCAGCTTACAAAGATCACTGATACATCAGCTGCCCAAGCCAGGCAAGGAAAGGACATACAAGGTATTCCATGGGATAGACTGAGTATCACCAGGGAAAAGTACAGATTGACAAGGCTTGAACAATACAGAAATTATGAGAATGTCCATTTATCTGGAGTTTTTGCGGATAAGGAATTCAAACTGGTGGAGAAGGGGGGCAATTATTACGAGTTCTTCCATAATTCAAGATTGGTGAAACCCACTATTCTTCATTTCCAGCTTAGAAATTTGGTTTGGGCTACTTCGAAGCATGATGTTTACCTAATTTCAAACAATTCAGTGATGCACTGGTCATCTTTAGCTGGCTATTTGTCGGAGACCCTTAATTTTGCAGGACATATAAAACCTACTGAGAAACATGCAGGAAGTTTAGTTGAGGGCTTTGCCCAAACTCAGGTCAGCACAATGGCCATCAAAGGGAACTTTCTGGTGGCCGGTGGTTTTCAGGGAGAGATTATTTGTAAGCGTTTGGATAAAAAGGGGGTAAGTTTTTGTGCTCGAATGACACACGAGGATAGTTCCATCACAAATGCGGTCGAAATATACGACAGCTTAAGGGGCGTGACATGTTTCATGGCGTCAAATAATGATTGTGGCGTCCGAGAATACGAAATGAAAGGCTTCCAACTTTTGAATCACTTCCATTTTCCTTGGGCAGTAAATCACACATCTGTTAGCCCGGATCGTAGGCTAATTGCTGTCGTCGGTGATCATGTCGATGGATTGCTCGTCGATTCTCAAAATGGAAAGACTATCACAACAATGGTTGGTCATCGAGATTACTCATTTGCGACGTCATGGCACCCTGATGGACGTATCTTTGCTACTGGGAGTCAAGACAAGACTTGCCGAGTATGGGACACAAGAAACATGTCATCCCCAATCGCGATCCTCAAGAGCAATCTGGGAGCTGTTCGTTCTCTGAGCTACTCATCCGACGGTCGGTTTCTAGTCCTGGCCGAGCCTGCTGATTTTGTGCACATTTACAGCGTGGATTCAGACTACAAAAAGAGGCAAGAGATCGATTTCTTCGGGGAAATCTCGGGTGTGTCGATGAGTCCGGATGACGAGTCTCTCTATATAGGAATCTGGGATAGAACTTATGCTAGTTTGCTTCAATACAACAAGAAGCATAACTATGGATATCTTGACTCCTACTTGTAA 1317 43.66 MSFQQQQVEEFDYMREESGMGDLNHEMDGEATVDEENDQLTKITDTSAAQARQGKDIQGIPWDRLSITREKYRLTRLEQYRNYENVHLSGVFADKEFKLVEKGGNYYEFFHNSRLVKPTILHFQLRNLVWATSKHDVYLISNNSVMHWSSLAGYLSETLNFAGHIKPTEKHAGSLVEGFAQTQVSTMAIKGNFLVAGGFQGEIICKRLDKKGVSFCARMTHEDSSITNAVEIYDSLRGVTCFMASNNDCGVREYEMKGFQLLNHFHFPWAVNHTSVSPDRRLIAVVGDHVDGLLVDSQNGKTITTMVGHRDYSFATSWHPDGRIFATGSQDKTCRVWDTRNMSSPIAILKSNLGAVRSLSYSSDGRFLVLAEPADFVHIYSVDSDYKKRQEIDFFGEISGVSMSPDDESLYIGIWDRTYASLLQYNKKHNYGYLDSYL 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16120005 16122881 + Bma019599.1 Bma04g00994 81363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00994 438 Gene3D - 157 430 IPR015943 GO:0005515
Bma04g00994 438 SUPERFAMILY WD40 repeat-like 128 418 IPR036322 GO:0005515
Bma04g00994 438 Pfam WD domain, G-beta repeat 301 338 IPR001680 GO:0005515
Bma04g00994 438 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 6 437 - -
Bma04g00994 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 347 IPR001680 GO:0005515
Bma04g00994 438 SMART WD40_4 299 338 IPR001680 GO:0005515
Bma04g00994 438 SMART WD40_4 342 381 IPR001680 GO:0005515
Bma04g00994 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 341 - -
Bma04g00994 438 PANTHER - 6 437 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00994 - - - zju:107422250 704.131
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00997 Bma04g00994 CCT
Bma04g00994 Bma06g01409 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00994 Bma-Chr4:16120005 Bma14g00658 Bma-Chr14:7104284 0 dispersed
Bma02g00996 Bma-Chr2:50537402 Bma04g00994 Bma-Chr4:16120005 0 wgd
Bma04g00994 Bma-Chr4:16120005 Bma05g01238 Bma-Chr5:51761696 0 wgd
Bma04g00994 Bma-Chr4:16120005 Bma06g01409 Bma-Chr6:50850261 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1084 . . Bda03g01080 . Bpe04g00995 . Bma04g00994 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0895 Cone11ag0609 . . . . Blo02g00418 Blo07g00077 . . . . Bma02g00997 Bma06g01409 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000780 3 4 6 6 3 2 3 2 2 2 2 2 3 2 2 2 2 4 3 2 2 2 2 2 3 2 1 11 7 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00994 Bma_Chr04 FPKM 9.045996 9.244722 0.704363 1.425499 1.040465 0.852786 0.713698 0.122475 0.191963 0.2972