Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00996 ATGAGAGATCGGGTTGAAAGATTTGTTGTTATTCCTTTATCATCTGGATGTGCTTCTCTTTCTAGCGTCGCTCTTGGTTCCGCCGCTTTTCCTCTTAGAAAATCGAAACCAGAATCAGGCCCATCTATTGCAAGTGAAGAGAGGTCGTCCAGAGAGAAAGAGAAGAACTCTTTCGGTTTATTGTTCGTACCAAAGTCTAACATTTCGAGTGGATTACAGAAATTGATTGGAAGCATCAAAAGTTTCTCTCAATCATTCATTTACAAGAGAGAGATGGAGGAGGAAGAAGCCGAAATGGAAATTGGGTACCCGACAGATGTAAAGCACCTGACACACATTGGATCAGATGGGTCTGCGACCAAGTGCTGGGACAACCTCAATCCTCCTGAAATATTCTCTTTCCCTTCATTTTCTTTCAGGCAGTTTGAACTCGCCATGGCTGCGCAGGCAAGCGAGCCCCTCGTCGTCGATCTCAAAATCCCGACGAAATCTCGGACCGTAAACTGA 507 44.97 MRDRVERFVVIPLSSGCASLSSVALGSAAFPLRKSKPESGPSIASEERSSREKEKNSFGLLFVPKSNISSGLQKLIGSIKSFSQSFIYKREMEEEEAEMEIGYPTDVKHLTHIGSDGSATKCWDNLNPPEIFSFPSFSFRQFELAMAAQASEPLVVDLKIPTKSRTVN 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16144772 16145550 - Bma019601.1 Bma04g00996 81365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00996 168 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC2 1 152 IPR044509 -
Bma04g00996 168 Pfam P21-Rho-binding domain 100 123 IPR000095 -
Bma04g00996 168 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC4 1 152 - -
Bma04g00996 168 ProSiteProfiles CRIB domain profile. 101 114 IPR000095 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00996 - - - qsu:111994191 158.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00996 Bma-Chr4:16144772 Bma01g01669 Bma-Chr1:47812873 4.92E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1087 . . Bda03g01082 . . . Bma04g00996 . . . . . . . . . . . . . . . . . Cla08g00382 Cam08g0802 Cec08g0372 Cco08g0472 Clacu08g0515 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013937 1 1 0 1 0 1 0 0 1 1 1 1 1 1 1 1 1 2 0 0 1 1 1 0 1 0 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00996 Bma_Chr04 FPKM 61.248669 68.097473 43.910786 42.234283 66.550339 64.628586 65.490128 99.734337 100.376686 101.506401