Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00998 GCACATGCACCTCCTCCCGGGTACTTTTTACATCTTGAGGAAACAAGTGCTGAATACAATTTTTACGTAAAGAAAAGGACGAGGATGCGCAGGTGGCTTTGTTGCAATTGTCATGGTGACGAGCCTTACCCATCTAATGACAATGAGTACCTCAAAAATCCACCAGATTATGCTGATGGTCATCCAAAGAGTTCCAAGGCATCTACTCTGGTTAAAACTGAAGCACAAAAGGCACCACCAACTATCGAAGTCCCTGCATTATCTTCTGAAGAACTTAAGGAAAAGACAGATAATTTTGGTTCCAAATCATTGATTGGTGAAGGATCTTATGGTAGAGTATATTATGCAAGCCTAGATAGTGGAAAAACTGTGGCTGTAAAGAAGCTCGATGTTTCATCTGAGCCTGACTCAAATATTGAGTTTTTGACCCAGGTTTCGATGGTGTCAAGATTGAAACATGAAAATCTTGTTGAGTTGCTTGGTTATTGTGTTGAAGGAAATCTCCGCGTACTTGCATATGAATTTGCAACCATGGGTTCTCTACATGACATATTGCATGGCAGAAAGGGAGTGCAAGGGGCACAGCCAGGTCCTGTGCTTGACTGGATACAGCGAGTGAAGATTGCAGTTGATGCAGCAAGAGGCCTGGAATACTTGCATGAGAAGGCTCAACCTTTTGTTATACACAGAGATATAAGATCTAGCAATGTGCTTCTCTTTGAGGAATTCAAGGCAAAGGTTGCAGATTTCAACCTTTCAAATCAAGCTCCTGACATGGCAGCTCGCCTCCATTCTACTCGAGTTTTGGGAACCTTTGGCTATCATGCTCCGGAGTATGCAATGACTGGACAATTGACACAGAAAAGTGATGTATATAGCTTTGGAGTGGTTCTCCTTGAGCTTCTCACTGGTAGGAAACCTGTTGATCATACAATGCCTCGTGGCCAGCAGAGTCTTGTTACTTGGGCAACTCCAAGGCTCAGTGAAGACAAAGTTAAACAGTGTGTAGATCCAAAGCTGAAAGGAGAATATCCCCCTAAAGGAGTTGCGAAGTTGGCGGCTGTTGCAGCCCTGTGTGTACAGTATGAATCTGAGTTCCGGCCGAATATGAGCATTGTTGTCAAAGCACTTCAACCCCTCCTCAAGCCACCTCCTCCGGCTCCAGAATCT 1170 44.19 AHAPPPGYFLHLEETSAEYNFYVKKRTRMRRWLCCNCHGDEPYPSNDNEYLKNPPDYADGHPKSSKASTLVKTEAQKAPPTIEVPALSSEELKEKTDNFGSKSLIGEGSYGRVYYASLDSGKTVAVKKLDVSSEPDSNIEFLTQVSMVSRLKHENLVELLGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPVLDWIQRVKIAVDAARGLEYLHEKAQPFVIHRDIRSSNVLLFEEFKAKVADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKALQPLLKPPPPAPES 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16247697 16250481 - Bma031125 Bma04g00998 81367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00998 390 Gene3D Phosphorylase Kinase; domain 1 61 175 - -
Bma04g00998 390 ProSitePatterns Tyrosine protein kinases specific active-site signature. 227 239 IPR008266 GO:0004672|GO:0006468
Bma04g00998 390 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 18 382 - -
Bma04g00998 390 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Bma04g00998 390 ProSiteProfiles Protein kinase domain profile. 99 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00998 390 SMART tyrkin_6 99 377 IPR020635 GO:0004713|GO:0006468
Bma04g00998 390 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 18 382 - -
Bma04g00998 390 Pfam Protein tyrosine and serine/threonine kinase 103 377 IPR001245 GO:0004672|GO:0006468
Bma04g00998 390 SUPERFAMILY Protein kinase-like (PK-like) 81 377 IPR011009 -
Bma04g00998 390 Gene3D Transferase(Phosphotransferase) domain 1 177 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00998 Bma-Chr4:16247697 Bma09g00825 Bma-Chr9:47108775 1.00E-171 dispersed
Bma04g00998 Bma-Chr4:16247697 Bma05g01241 Bma-Chr5:51791420 0 wgd
Bma04g00998 Bma-Chr4:16247697 Bma06g01427 Bma-Chr6:50993322 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66462 PF07714 PK_Tyr_Ser-Thr 6.60E-47 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00998 K13436 - mnt:21407434 644.425