Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01016 ATGGATTCGGATCAGGCAAAGCTTTTTATTGGCGGGATTTCATGGGAAACCTCGGAGGAGATTCTGAGGGATTACTTTAGCAACTATGGCGATGTTTTGCAGACCACAGTGATGAGAGACAAACTCTCTGGTAAGCCTAGAGGTTTTGGATTCGTGGTCTTTGCAGATCCTTCCATCATCGATCGGGTTCTTCAAGATAAGCACACCATCGATGGGAGAACGGTTGATGCTAAGTTGGCCATGTCAAGGGAGGAGCAACAAAATTTTACCAAAGCAGGGAATGGTAGGAGTGTAGGGGGTGGTGGAAATATGCGGACCAAAAAGATATTTGTTGGAGGACTGCCTCCCACTTTGACTGAAGAAGCTTTTAAGCAATACTTTGAGACTTATGGCCATGTTACTGATGTAGTAGTCATGTATGATCAAAATACTGGACGACCAAGAGGTTTTGGATTTATTTCTTTTGATACTGAAGAAGCTGTTGATAGGGTTTTATACAAGACATTTCATGATTTGAACGGGAAGCAAGTGGAAGTAAAGAGAGCACTTCCAAAAGATGCCAATCCTGGTGGAGGTAGTCTAGCAAGTGGTGATTCTATTTCGTTAGGTGGTGGATATCAGGGTTATGGGGGCTCTAATGGCAATGCAAACTCATATGATGGTAGATTGGATTCCAATAGGTACATGCAGCCTCAAGGCTCTGGTGGAGGTTTCCCACCTTATAGTTCTGGCTATGGATATAATCCTTCAAATAATGGTGTTGGTTATGGTAGTTATGGTAACTATGGAGGTGCTAATACTGGGTACGGTGCCCCTGCTACTGCTGCCTATGGAAATCCAAATGTACCTAATGCTGGTTATGGAAATTCTCCTCAAGGTGGGCCTAGAAATTCATGGAGCACTCAAGCTCCAACTGGGTATGGGGCTATGGGTTATGGGAATCCTGCTCCTTGGGGTACTCCAGGTGGCAATGTTGGAGTTGGCGGTGGAGTTCCTAGTGCTGGAATGGTTGGTCAGTCTCCTAGTGCTGGTGGCTTTGGGAATCAAAACTATGGATACGGTGGGTATGGAAATCAAGGTTATGGATATGGTGGTAACGACGGAACTTATGGTAATCCATCTGGGTATGGGGCTGTTGGAGGACGATCTAGTACTACCCCTAATAGCAATAGTGGTGTTCCGAGTGGGGGAGAATATCAAGGGAATGGTGGTGGCTATGGTGACTCAAATGGTAATCCAGGTTATGGGAATGCAATGTGGAGATCCGATTCATCCCAAGCATCTGGAACTTATGGATCTCAGGCAAATGGTCCTTACGGTGGACAATTAAGTAGTGGATATGGCAGCGGTCCTCAGGCCCGCCGGGTCCAACAACAGTAA 1380 45.8 MDSDQAKLFIGGISWETSEEILRDYFSNYGDVLQTTVMRDKLSGKPRGFGFVVFADPSIIDRVLQDKHTIDGRTVDAKLAMSREEQQNFTKAGNGRSVGGGGNMRTKKIFVGGLPPTLTEEAFKQYFETYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLYKTFHDLNGKQVEVKRALPKDANPGGGSLASGDSISLGGGYQGYGGSNGNANSYDGRLDSNRYMQPQGSGGGFPPYSSGYGYNPSNNGVGYGSYGNYGGANTGYGAPATAAYGNPNVPNAGYGNSPQGGPRNSWSTQAPTGYGAMGYGNPAPWGTPGGNVGVGGGVPSAGMVGQSPSAGGFGNQNYGYGGYGNQGYGYGGNDGTYGNPSGYGAVGGRSSTTPNSNSGVPSGGEYQGNGGGYGDSNGNPGYGNAMWRSDSSQASGTYGSQANGPYGGQLSSGYGSGPQARRVQQQ 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17863476 17865985 + Bma019632.1 Bma04g01016 81385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01016 459 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 442 - -
Bma04g01016 459 CDD RRM2_DAZAP1 105 184 IPR034131 GO:0003723
Bma04g01016 459 Gene3D - 105 188 IPR012677 -
Bma04g01016 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 168 IPR000504 GO:0003723
Bma04g01016 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Bma04g01016 459 MobiDBLite consensus disorder prediction 378 397 - -
Bma04g01016 459 MobiDBLite consensus disorder prediction 415 459 - -
Bma04g01016 459 SUPERFAMILY RNA-binding domain, RBD 106 214 IPR035979 GO:0003676
Bma04g01016 459 SUPERFAMILY RNA-binding domain, RBD 3 103 IPR035979 GO:0003676
Bma04g01016 459 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 442 - -
Bma04g01016 459 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bma04g01016 459 SMART rrm1_1 108 180 IPR000504 GO:0003723
Bma04g01016 459 MobiDBLite consensus disorder prediction 375 459 - -
Bma04g01016 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Bma04g01016 459 Gene3D - 1 92 IPR012677 -
Bma04g01016 459 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Bma04g01016 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01016 K14411 MSI; RNA-binding protein Musashi - jre:108981229 526.554
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g01016 Bma05g01250 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01016 Bma-Chr4:17863476 Bma13g00725 Bma-Chr13:21382933 1.05E-120 dispersed
Bma11g00318 Bma-Chr11:2981543 Bma04g01016 Bma-Chr4:17863476 2.72E-08 transposed
Bma13g00599 Bma-Chr13:13797660 Bma04g01016 Bma-Chr4:17863476 1.26E-11 transposed
Bma14g00244 Bma-Chr14:2929911 Bma04g01016 Bma-Chr4:17863476 1.28E-23 transposed
Bma04g01016 Bma-Chr4:17863476 Bma05g01250 Bma-Chr5:51839078 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g762 Blo01g00299 Blo12g00140 Bda03g01091 . Bpe04g00987 . Bma04g01016 Bma05g01250 Cmo08g01037 Cmo17g00147 . . . . . . . . . . . . . . Cla06g00688 Cam06g0739 Cec06g0746 Cco06g0757 Clacu06g0730 Cmu06g0714 Cre06g1489 . . Cone7ag0342 Cone4ag0355 . Csa02g01037 Chy05g00300 . . . . . Bpe05g01104 . . . Sed09g0643 . . Cma08g01068 Cma17g00148 Car08g00943 Car17g00130 Cpe12g00125 Cpe17g00209 Bhi12g01574 Tan06g2380 Cmetu05g0543 Lac12g2130 Hepe03g0304 . Lcy13g0400 . . . . . . . Lsi09g01204 . . Cme05g00604
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001187 1 2 4 4 3 1 4 1 3 2 1 2 4 2 2 4 2 6 3 1 2 2 2 2 2 2 2 4 4 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01016 Bma_Chr04 FPKM 10.986842 12.750876 8.538872 10.882783 15.160227 12.756196 12.731771 14.610862 14.663084 17.155867