Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01022 ATGGCTGCCTCACCGGCTGCCGCCATTGCCTCTTCCTCCATTCGCTCTCTCCGTTGTCTCACAATCTCAACCCCTCGCTTCTTCGTTCCGATTTCTTCGCATCCTTTTGCAGCAGTTTCGCAGAAATGGCGGATTCTGAGCGTATCCGCCGCTGTCGCCCAAGAAGAGACTGTAATGGCTGAGTTTGAACAAGGGTTGGTGGAAGAACTACAGGAGGTAACTGATGAAGTGGTGGCTGTTGAAGAAAAGGCGATTACTGCTTCCACGAAACTTTACTTTGGGAATTTGCCTTATAGTGTTGATAGTGCACAGCTTGCTGCTGTGATTCAGGACTATGCTAGCCCTGAGATGATTGAGGTTCTTTATAACAGAGACACCGGCAGAAGTAGAGGATTTGCTTTTGTTACAATGAGTAGTATCGAAGATTGTAACAATGTTATCAAAAATCTCGATGGAAATGTTTATATGGGAAGAACGTTGAGGGTGAATTATTCAGATAAACCGAAACCCAAAGAACCTTTATATCCAGAAACTGAGTTTAAGCTTTTCATCGGGAATTTATCGTGGTCTGTCACGTCGGAGAGCTTAACGCAAGCTTTTCAAGAATATGGGAATGTGGTTGGAGCAAGGGTTTTATACGACGGCGAAACGGGAAAATCCCGTGGATATGGATTCGTAAGCTACTCGACAAAAGCCGAGATGGAAAGTGCCCTTGAGTTTCTAAATGGAATGGAACTTGAAGGAAGGGCAATACGGTTGTTTCTAGAAAAATGGTTGCGGTGA 783 44.83 MAASPAAAIASSSIRSLRCLTISTPRFFVPISSHPFAAVSQKWRILSVSAAVAQEETVMAEFEQGLVEELQEVTDEVVAVEEKAITASTKLYFGNLPYSVDSAQLAAVIQDYASPEMIEVLYNRDTGRSRGFAFVTMSSIEDCNNVIKNLDGNVYMGRTLRVNYSDKPKPKEPLYPETEFKLFIGNLSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVSYSTKAEMESALEFLNGMELEGRAIRLFLEKWLR 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17949022 17962233 + Bma031126 Bma04g01022 81391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01022 260 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 125 164 - -
Bma04g01022 260 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 68 128 - -
Bma04g01022 260 PANTHER TRANSFORMER-2-RELATED 68 128 - -
Bma04g01022 260 PANTHER TRANSFORMER-2-RELATED 172 255 - -
Bma04g01022 260 SUPERFAMILY RNA-binding domain, RBD 173 253 IPR035979 GO:0003676
Bma04g01022 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 258 IPR000504 GO:0003723
Bma04g01022 260 PANTHER TRANSFORMER-2-RELATED 125 164 - -
Bma04g01022 260 Gene3D - 170 258 IPR012677 -
Bma04g01022 260 SMART rrm1_1 181 254 IPR000504 GO:0003723
Bma04g01022 260 SMART rrm1_1 90 163 IPR000504 GO:0003723
Bma04g01022 260 Coils Coil 63 83 - -
Bma04g01022 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 252 IPR000504 GO:0003723
Bma04g01022 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 161 IPR000504 GO:0003723
Bma04g01022 260 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 172 255 - -
Bma04g01022 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 167 IPR000504 GO:0003723
Bma04g01022 260 Gene3D - 53 169 IPR012677 -
Bma04g01022 260 SUPERFAMILY RNA-binding domain, RBD 84 172 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01022 - - - jre:108990562 324.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01925 Bma-Chr1:71038805 Bma04g01022 Bma-Chr4:17949022 5.09E-12 dispersed
Bma04g00930 Bma-Chr4:13093864 Bma04g01022 Bma-Chr4:17949022 5.30E-28 dispersed
Bma04g00934 Bma-Chr4:13246495 Bma04g01022 Bma-Chr4:17949022 6.97E-20 dispersed
Bma04g01022 Bma-Chr4:17949022 Bma10g00134 Bma-Chr10:1199432 2.15E-09 dispersed
Bma01g02601 Bma-Chr1:83630677 Bma04g01022 Bma-Chr4:17949022 3.27E-20 transposed
Bma02g01004 Bma-Chr2:51124766 Bma04g01022 Bma-Chr4:17949022 1.24E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g784 . . Bda03g01097 . Bpe04g00983 . Bma04g01022 . . . . Cma14g01844 . . . Cpe08g00361 Cpe03g01544 . . . . . . . . . . . . . . Cone14ag0183 Cone15ag0192 . . Lsi05g01774 . . Cme06g00447 . . . . . . . . . Cmo06g01297 Cmo14g01887 . . . . . . . . . . . . . Cla05g00406 Cam05g0443 Cec05g0451 Cco05g0451 Clacu05g0440 Cmu05g0418 Cre05g0480 . Csa03g01166 Chy06g00428 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012811 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 2 1 1 1 1 1 0 1 1 1 0 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01022 Bma_Chr04 FPKM 19.37623 19.187933 19.664934 20.792372 13.721189 12.674817 14.734155 8.312867 8.453748 11.043018