Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01023 TCCACGATGTCGATTTTAGCTCCGTTCCAACTCCTGGAACTGAATCTGATTTCCGCTCAGGATTTAGCCCCGGCTTCTCGCTCTATGAGGACCTACGCCGTCGCATGGGTCCACCCGGACAGAAAGCTCTCGACCCGAGTCGACACCCACGGCCACAACAACCCCACCTGGAATGACAAGTTCGTCTTCCGCGTTGATGACGAATTTTTGCACAACGATACGTCGGCCGTCATGATCGAGATCTACGCTTTTCATTGGTTCAGAGATATTCACGTCGGCACCGTTCGGATTCTGGTGGGTAATCTCATTCCCACGCCGCCTAGGCTCCACCCTTACAATAAACAGCCTCAGGTGGGGATGCGGTTCGTGGCGCTCCAGGTCCGACGCCAGTCCGGTCGCCCGCAAGGGATTTTGAACATTGGGGTGGCGCTGCTTCATAGCTCAATGCGGAGCATGCCTTTGTATTCTCAACTAAGCACCTCAGCCGTTGGATATCGCCAGCTGATGGGAGAGGATTCCCCTCATCACAATCATCACCATAATACTAACAATCCTCACACCCATCTAATGAATAACACCAAGCCGGAGCTCCGACGAATAAAAAGTGATACAAGTTCTATGATTGTCGGTTCCGAGCTTAGAGGATCTGAGTTGTTGGGGCTTAATGGGAGAGTTGGCACTAAATCAAAAGCTAGCTCCATGGTCAGTGGCGCAGAAGTTTCCAAGAAGAAGAAAGGAGGATCAAGGGCCTACTCGTTGATCAGCGTCTCTAGATCTGCCATCAAGGGCAAGAAGGAGAAGAAGGGGAAATCTAGATCGGTTATTAGCGGCTCGGAGCTTGAGGACTTGCAAAATAAAGAGAAACGTTGGAAGCCGAGATCCATAGTCAACGGCATAGAAGCAACAGAAACTCCTAAGAACGGCAAAAATGAAGATTCAAGCTCGATCAACGATTCAGATATAGCCCCCGTGTACGAGCCACCGCCGAAACAGAAGACGGTGAAAGTGAAACCTGAATTCATTGATTCGCCACGGAGAAAAGTAGGAAATGACAAGCCACAACCGTCTGCAAAGATAAACCCGATTGAATATGTAGGCCCACAGAAAACTTCGACAAGGGCTACGCCGAAGGGGACACCGCTGCATGATAAATATGCGACTCCACAGAGAGGAGTAACGCCACTGCATGGAAAGACCACAAAATTTCAAGATTTAAACTACGGAACTCCAAGGAAATCTTTCTTGTCCAAGCCTTTCTTGACGGAATCCGAGCTTGGTCCGTCGCCGTCTGAGGTTGCAGCGGCGATGGCGCAAGCTCCAAAAGTTGATGACGGTGGAGAGAGCTCAGTCGTCGGCGGGTGGAGTCTCGACGGTAGCGTGGAGGGATTACAATCCAAGCTTGAAAGGTGGAGAACGGAACTCCCACCGGTACATGACCGCGGTGAGTACTCGAGTTTCCAGTCAAGCGAGAGCCGTCACACGAGGCGGCATACTGACGGCGGTAACGGCCTCTTCTCCTGCTTCAGCAACATTTGCGGTTGCCAATGCTCCATAGTCTGCGGAGGAAAGACAGCCAAGAAAACTGCTAGCGGGCGAGTCCACCGGAGCCCTTCGGCGGAAAATTTGAGCTACTCGTAA 1638 51.47 STMSILAPFQLLELNLISAQDLAPASRSMRTYAVAWVHPDRKLSTRVDTHGHNNPTWNDKFVFRVDDEFLHNDTSAVMIEIYAFHWFRDIHVGTVRILVGNLIPTPPRLHPYNKQPQVGMRFVALQVRRQSGRPQGILNIGVALLHSSMRSMPLYSQLSTSAVGYRQLMGEDSPHHNHHHNTNNPHTHLMNNTKPELRRIKSDTSSMIVGSELRGSELLGLNGRVGTKSKASSMVSGAEVSKKKKGGSRAYSLISVSRSAIKGKKEKKGKSRSVISGSELEDLQNKEKRWKPRSIVNGIEATETPKNGKNEDSSSINDSDIAPVYEPPPKQKTVKVKPEFIDSPRRKVGNDKPQPSAKINPIEYVGPQKTSTRATPKGTPLHDKYATPQRGVTPLHGKTTKFQDLNYGTPRKSFLSKPFLTESELGPSPSEVAAAMAQAPKVDDGGESSVVGGWSLDGSVEGLQSKLERWRTELPPVHDRGEYSSFQSSESRHTRRHTDGGNGLFSCFSNICGCQCSIVCGGKTAKKTASGRVHRSPSAENLSYS 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17962237 17963874 + Bma019638.1 Bma04g01023 81392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01023 545 MobiDBLite consensus disorder prediction 270 294 - -
Bma04g01023 545 MobiDBLite consensus disorder prediction 332 352 - -
Bma04g01023 545 MobiDBLite consensus disorder prediction 300 320 - -
Bma04g01023 545 CDD C2_SRC2_like 12 140 IPR044750 GO:0006952
Bma04g01023 545 MobiDBLite consensus disorder prediction 478 497 - -
Bma04g01023 545 MobiDBLite consensus disorder prediction 172 191 - -
Bma04g01023 545 Pfam C2 domain 11 106 IPR000008 -
Bma04g01023 545 SMART C2_3c 11 111 IPR000008 -
Bma04g01023 545 MobiDBLite consensus disorder prediction 261 404 - -
Bma04g01023 545 PANTHER INGRESSION PROTEIN FIC1 3 520 - -
Bma04g01023 545 Gene3D C2 domain 9 157 IPR035892 -
Bma04g01023 545 MobiDBLite consensus disorder prediction 228 247 - -
Bma04g01023 545 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Bma04g01023 545 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 158 IPR035892 -
Bma04g01023 545 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 3 520 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01023 - - - csv:101215059 623.239
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00748 Bma04g01023 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01072 Bma-Chr2:52436467 Bma04g01023 Bma-Chr4:17962237 1.40E-36 dispersed
Bma03g00165 Bma-Chr3:1264874 Bma04g01023 Bma-Chr4:17962237 8.87E-08 dispersed
Bma04g01023 Bma-Chr4:17962237 Bma06g01175 Bma-Chr6:48870702 1.96E-38 dispersed
Bma02g00748 Bma-Chr2:38538406 Bma04g01023 Bma-Chr4:17962237 5.16E-158 transposed
Bma04g01023 Bma-Chr4:17962237 Bma05g01255 Bma-Chr5:51901210 5.42E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g787 . . Bda03g01098 Bda08g00001 Bpe04g00982 Bpe14g01285 Bma04g01023 . Cmo08g01028 Cmo17g00136 . . . . . . . . . . . . . . Cla06g00700 Cam06g0751 Cec06g0757 Cco06g0769 Clacu06g0742 Cmu06g0725 Cre06g1501 . . . . . Csa02g01025 Chy05g00289 . Blo02g00684 . . Bda13g00035 Bpe05g01111 . Bma02g00748 . Sed09g0214 . . Cma08g01057 Cma17g00133 Car08g00933 Car17g00119 . . Bhi12g01558 Tan06g2367 Cmetu05g1475 . . . Lcy13g0413 . . . . . . . Lsi09g01193 . . Cme05g00621
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005929 3 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01023 Bma_Chr04 FPKM 7.724876 8.731199 8.698574 9.722234 13.88131 13.167017 14.705595 10.098678 8.576027 9.626532