Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01027 TTCCCTGCGGGCGCAAGTCATTTGATTTTCACTTCCTTCAAAGTCTTCTCTGTTTTCTCCCAGCTTTCTATCGATCGTTTCTCACTCACATTAACCAGACAGACTCAAGCGCGAATTCTCGCTAGTGGATTAGAACAGGATGCCTTTCTCGCTACTAAACTCATTTCTGCTTACTCTGCGTGCGGCAGCCTGGCCGACTCACTCCGCGTTTTTCGCTCCATTTCGTTGAAAAATGTGTTCTTATGGAACTCCTTGATTAGTGGGTACGTCAAAAATGGTGCAAATGAAGAGGCGTGTGATTTGTTTTACGAGATGCAGCGATGTAGTGTTTCGCCGGATGATTATACACTGGCGACGATGGCGAAAGTGTGTAGCGAGGGCGGGGGATTGGAAGTAGGAGAAGTTATACATGGGAAGAGCGTAAAACTTGGTTTTGATATTGATGTTGTTGTTGCTAATTCCCTGATGTCGATGTACTGCAAGTGCGGTGGTTTCAAGGTTGCCCGGAAACTGTTCGATGAAATTCCTGCTAGAAACTCAGGTTCTTGGAATGTGCTTCTAGCAGGATATGCGAGCTTTTCTGATTGCAGATATCATGAGAAAATTTGGGAAATCGTAAAGCATATGCAAATTGATGGTATAAAACCTGATGCATTTACTCTGTCTATTGTTTTGCCTGTTTGTGGTGGTAATACTGAGAGATGGGATTATGGGAAAGAGCTTCATTGTTATATTTTGAAGAGCGAATTTGATTTTGATTATCGTTCGAATGTTCATCTGGGTTCTTGTCTGATTGATATGTATTCAAAGAACAATAATGTCACTATGAGTAGACGGGTCTTTGAGCAAATGAGGAGTACAAACGTTTATATTTGGGTGGCTATGATTGGAGGTTACATCCGTAATGGCGAATCAGATGAGGCAATGATTCTTTTTCGTGATATGCAAGGGAAAGACAGGATAGAACCAAGTAGAATCTCTATAGTGACTATTTTGCAAGCTTGTAGCTCCCAAGGAGGCCTAACGAATGGGAAACAAATTCACGGATTCGCTCTGAGAAAAGAATTGAACGGTGATGTATCGTTGTGTAATTCTTTAATCGATATGTATTGCAAGTGTGGAAATTCAGTTTATGCAAGAAGAGTTTTTGACGATTCATCTTTTTCGAGGGACACAATCTCTTGGACAACCATGATTTCTGGGTATGGTCTCCACGGACAGGGTGAGGAAGCCATTCTTTTGTTCAATCAGATGATCCACCTTCGTCTAAAACCAGACACGATAACGATAGTGGGGGTTTTATCAGCCTGTGGAAGAACGGGTTTGGTAGATGAAGGACTCAATATTTACAACAAAGTGCTTAACGAATTAGGAATTGAACCAACGACCGAGATTTGCGCTACAGTGGTTGATATGGTGGCACGATCAGGACAGCTCAATCTGGCGTTAGATTTCATCAAAACAATGCCTGTCAAACCGGGGCCTACTGTTTGGGGAGCTCTTCTCACTTCTTCTTTGAATCATGGTAATTCAGAGATGCAAGAACTGGCTTATAAATTCCTCGTTGAACTGGAACCTCAAAACCCATCAAATTTCGTTTTGTTATCAAACTTACACGCTTCTTCGAGCAGATGGGAAGTGGTGTCCCATGTCAGAAAAGCCATGAAAGAAAGAGGTTTGAAAAAGGTAGCTGGGTGTAGTTGGATAGTCGTCAACCGCAGTACTCATTGCTTCCACGTTGCAGATAAAACTCATCCTTATTCCGAGTCAATTTACGAAGTAGTTGATGGCCTTTTTTTCACTATGAAGGGATCAGAGTATGCAATTGATTTTGAAATACTTGGTTTGACAGATCTACCGTGA 1863 41.92 FPAGASHLIFTSFKVFSVFSQLSIDRFSLTLTRQTQARILASGLEQDAFLATKLISAYSACGSLADSLRVFRSISLKNVFLWNSLISGYVKNGANEEACDLFYEMQRCSVSPDDYTLATMAKVCSEGGGLEVGEVIHGKSVKLGFDIDVVVANSLMSMYCKCGGFKVARKLFDEIPARNSGSWNVLLAGYASFSDCRYHEKIWEIVKHMQIDGIKPDAFTLSIVLPVCGGNTERWDYGKELHCYILKSEFDFDYRSNVHLGSCLIDMYSKNNNVTMSRRVFEQMRSTNVYIWVAMIGGYIRNGESDEAMILFRDMQGKDRIEPSRISIVTILQACSSQGGLTNGKQIHGFALRKELNGDVSLCNSLIDMYCKCGNSVYARRVFDDSSFSRDTISWTTMISGYGLHGQGEEAILLFNQMIHLRLKPDTITIVGVLSACGRTGLVDEGLNIYNKVLNELGIEPTTEICATVVDMVARSGQLNLALDFIKTMPVKPGPTVWGALLTSSLNHGNSEMQELAYKFLVELEPQNPSNFVLLSNLHASSSRWEVVSHVRKAMKERGLKKVAGCSWIVVNRSTHCFHVADKTHPYSESIYEVVDGLFFTMKGSEYAIDFEILGLTDLP 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18004808 18006670 + Bma019642.1 Bma04g01027 81396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01027 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 318 IPR002885 -
Bma04g01027 620 Pfam PPR repeat family 77 124 IPR002885 -
Bma04g01027 620 Pfam PPR repeat family 288 336 IPR002885 -
Bma04g01027 620 Pfam PPR repeat family 391 437 IPR002885 -
Bma04g01027 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Bma04g01027 620 TIGRFAM PPR: pentatricopeptide repeat domain 393 427 IPR002885 -
Bma04g01027 620 TIGRFAM PPR: pentatricopeptide repeat domain 290 323 IPR002885 -
Bma04g01027 620 TIGRFAM PPR: pentatricopeptide repeat domain 262 290 IPR002885 -
Bma04g01027 620 TIGRFAM PPR: pentatricopeptide repeat domain 81 113 IPR002885 -
Bma04g01027 620 PANTHER OS07G0436600 PROTEIN 19 604 - -
Bma04g01027 620 Gene3D Tetratricopeptide repeat domain 348 436 IPR011990 GO:0005515
Bma04g01027 620 Gene3D Tetratricopeptide repeat domain 135 231 IPR011990 GO:0005515
Bma04g01027 620 Gene3D Tetratricopeptide repeat domain 232 347 IPR011990 GO:0005515
Bma04g01027 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Bma04g01027 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 461 IPR002885 -
Bma04g01027 620 Pfam E motif 508 569 IPR046848 -
Bma04g01027 620 Gene3D Tetratricopeptide repeat domain 16 134 IPR011990 GO:0005515
Bma04g01027 620 Gene3D Tetratricopeptide repeat domain 437 599 IPR011990 GO:0005515
Bma04g01027 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Bma04g01027 620 Pfam PPR repeat 262 286 IPR002885 -
Bma04g01027 620 Pfam PPR repeat 151 178 IPR002885 -
Bma04g01027 620 Pfam PPR repeat 363 384 IPR002885 -
Bma04g01027 620 PANTHER OS07G0578800 PROTEIN-RELATED 19 604 IPR045215 GO:0003723|GO:0009451
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01027 - - - jre:109010424 753.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01027 Bma-Chr4:18004808 Bma01g01463 Bma-Chr1:26738784 5.54E-51 dispersed
Bma04g01027 Bma-Chr4:18004808 Bma02g01043 Bma-Chr2:51951043 6.73E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g805 . . Bda03g01102 . Bpe04g00977 . Bma04g01027 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0193 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008407 1 5 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01027 Bma_Chr04 FPKM 3.610772 3.683335 3.04949 3.53398 5.20155 5.871304 5.984642 7.836644 6.519765 5.057831