Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01034 GTTATTAGTAGGTTGGGTTGGAGTAGAAATTATGCAGCAAAAGACATAAGATTTGGCGTGGAGGCTCGAGCTCTCATGCTTAAGGGAGTAGAGGAACTTGCCGAAGCAGTTAAAGTTACTATGGGTCCTAAGGGACGCAATGTGGTCATTGAACAAAGCTTCGGGGCTCCCAAAGTAACAAAAGATGGTGTAACTGTTGCCAAGAGCATTGAGTTCAAAGATAGAGTGAAGAATATTGGTGCTAGCCTTGTCAAACAGGTTGCTAATGCAACCAATGATGTGGCGGGTGATGGGACCACATGTGCTACTGTTCTTACGCGTGCAATATTTGCTGAAGGATGCAAGTCAGTTGCTGCAGGGATGAATGCAATGGACTTAAGACGAGGCATTACCATGGCAGTTGATGCTGTGGTAACGAACTTAAAGAGCAGAGCACGAATGATCAGCACGTCTGAAGAGATAGCTCAAGTGGGAACCATATCTGCTAATGGAGAAAGGGAAATAGGTGAGCTGATTGCCAAGGCTATGGAGAAAGTTGGAAAAGAGGGAGTCATAACAATCTCAGATGGAAAAACATTGTACAATGAGTTGGAAGTTGTTGAAGGAATGAAATTAGATAGAGGATACATATCCCCTTATTTCATTACAAACCAGAAAAACCAAAAATGTGAACTGGAAGATCCACTTATTCTAATCCATGAAAAGAAAATATCAAGCATAAATGCTGTTGTGAAAGTCTTAGAATTAGCGCTGAAGAGACAAAGACCCTTGCTCATTGTTGCTGAAGATGTTGAAAGCGATGCTCTAGCCACACTCATTCTAAATAAACTTCGTGCTGGGATCAAGATTGTTTTATTGCATTCCATGCGTCAGGTCTGTGCTATTAAAGCCCCAGGTTTTGGTGAGAACAGAAAGTCCAATCTGCAGGATCTCGCAGTGCTCACAGGGGGCAACCTTATCACTGAAGAGCTTGGCTTAAATCTTGACAAAGTAGAGCTGGATATGCTGGGTACTTGCAAAAAGGTCACTATTTCCAAGGATGACACTGTTATTCTTGATGGTGCTGGTGACAAAAAGGCTATTGAAGAAAGATGTGAGCAGATAAGGTCCGGAATAGAGTTGAGCACTTCTGATTACGACAAGGAAAAATTACAAGAAAGATTAGCTAAACTTTCTGGTGGCGTGGCTGTATTAAAAATTGGAGGTGCCAGTGAAGCTGAAGTTGGTGAGAAAAAGGATAGAGTGACAGATGCATTGAATGCCACAAAGGCAGCTGTAGAAGAGGGCATTGTTCCTGGTGGTGGTGTTGCTCTTCTTTACGCAGCCAAAGAGTTGGAAAAACTGCCAACTGCTAACTTCGATCAGAAGATTGGAGTGCAGATTATTCAAAACGCTCTAAAGACTCCTGTGCACACAATTGCTGCCAATGCCGGAGTTGAGGGAGCTGTGGTAGTTGGTAAGCTGTTGGAGCAAGATAACCCCGACCTTGGGTATGATGCCGCTAAAGCAGGTGAATACGTAGACATGGTCAAGGCTGGAATAATAGATCCACTGAAAGTAATTAGGACTGCCTTGGTGGATGCTGCGAGCGTATCATCTCTGATGACGACAACAGAAGCAATCGTTACTGAAATACCCAAGGATGACAAAGAGGTTCCGTCAATGGGTGGTGGCATGGGAGGAATGGATTATTGA 1695 43.54 VISRLGWSRNYAAKDIRFGVEARALMLKGVEELAEAVKVTMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKDRVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILIHEKKISSINAVVKVLELALKRQRPLLIVAEDVESDALATLILNKLRAGIKIVLLHSMRQVCAIKAPGFGENRKSNLQDLAVLTGGNLITEELGLNLDKVELDMLGTCKKVTISKDDTVILDGAGDKKAIEERCEQIRSGIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLPTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNPDLGYDAAKAGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVTEIPKDDKEVPSMGGGMGGMDY 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18248070 18251833 + Bma019654.1 Bma04g01034 81403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01034 564 SUPERFAMILY GroEL equatorial domain-like 17 542 IPR027413 -
Bma04g01034 564 Pfam TCP-1/cpn60 chaperonin family 33 544 IPR002423 GO:0005524
Bma04g01034 564 ProSitePatterns Chaperonins cpn60 signature. 424 435 IPR018370 GO:0005524|GO:0006457
Bma04g01034 564 SUPERFAMILY GroEL apical domain-like 195 395 IPR027409 -
Bma04g01034 564 PRINTS 60kDa chaperonin signature 93 120 IPR001844 GO:0042026|GO:0140662
Bma04g01034 564 PRINTS 60kDa chaperonin signature 369 394 IPR001844 GO:0042026|GO:0140662
Bma04g01034 564 PRINTS 60kDa chaperonin signature 37 63 IPR001844 GO:0042026|GO:0140662
Bma04g01034 564 PRINTS 60kDa chaperonin signature 287 310 IPR001844 GO:0042026|GO:0140662
Bma04g01034 564 PRINTS 60kDa chaperonin signature 417 438 IPR001844 GO:0042026|GO:0140662
Bma04g01034 564 Gene3D - 147 429 IPR027410 -
Bma04g01034 564 TIGRFAM GroEL: chaperonin GroL 13 547 IPR001844 GO:0042026|GO:0140662
Bma04g01034 564 Hamap Chaperonin GroEL [groEL]. 12 562 IPR001844 GO:0042026|GO:0140662
Bma04g01034 564 Gene3D GroEL 202 392 IPR027409 -
Bma04g01034 564 SUPERFAMILY GroEL-intermediate domain like 148 215 IPR027410 -
Bma04g01034 564 CDD GroEL 14 544 IPR001844 GO:0042026|GO:0140662
Bma04g01034 564 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 3 557 - -
Bma04g01034 564 Gene3D - 16 543 IPR027413 -
Bma04g01034 564 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 3 557 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01034 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - zju:107408563 991.104
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g01034 Bma05g01268 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01034 Bma-Chr4:18248070 Bma14g00450 Bma-Chr14:5183304 9.24E-149 dispersed
Bma09g00965 Bma-Chr9:49190818 Bma04g01034 Bma-Chr4:18248070 0 transposed
Bma04g01034 Bma-Chr4:18248070 Bma05g01268 Bma-Chr5:52031124 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g828 Blo01g00313 Blo12g00132 Bda03g01108 . Bpe04g01053 . Bma04g01034 Bma05g01268 . . . . . . . . . . . . . . . . Cla06g00710 Cam06g0764 Cec06g0768 Cco06g0779 Clacu06g0752 Cmu06g0735 Cre06g1515 Cone14ag0201 Cone15ag0219 . Cone4ag0377 . . . . . . . . Bpe05g01123 . . . . . . . . . . . Cpe17g00226 Bhi12g01535 . . Lac12g2109 . . . . . . . . . . . . . Cme05g00632
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000827 3 3 3 3 3 3 4 3 3 2 3 3 4 2 3 4 3 5 4 3 3 2 3 3 3 2 3 4 2 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01034 Bma_Chr04 FPKM 9.47064 11.176498 26.05089 24.173733 24.587568 22.633797 29.043209 14.201271 15.272484 15.029499