Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01035 ATGTGTGTCATCTTTTGCACAGATCTAGATTCGCTGCCTAATATTCTGCAAAAGAAATATGCTTTGTTACGTGATCTGGATAAAAGTTTGCAAGAACTTATAAAACAAAATGAACAACGATGTGAGCAAGAAATAGAGGACATCAAACGGGGTGTTAAATCTGGCATTAGTTCCTCTAAAGCATCACCTCTTCGATTCTCTGATGAAGCGCTTGATGAACAAAAGCATAGCATTAGAATTGCTGATGAAAAGGTTGCTCTGGCTGTTCAAGCTTATGATTTGGTAGATACCCACATTCAGCAGCTTGATCAATATTTGAAAAAAATTGATGAAGAGCTACGACGAGAAAGAGATGCTGTTAGTGGATTACCAACTTCAAGTATCGATGGCAGCATAAAATCTGGAAGGGGTAATGAGAGTGGCAAGGGAGGGCGTAAAAAAACACGGCAAGCAACAGCAGCGGCAGTGGCAGCAATTTCAGCGGCTACGGAAGTAGCAATACAAGCTGTTAGTAATCCAATTGGAACAGAATTGGATTTACCACTGGACCCAAACGAGCCTACCTACTGTTTCTGTAACCAAGTTAGCTTCGGTGAAATGGTAGCTTGCGACAACCCTGATTGCAAGATAGAATGGTTCCATTTCGGGTGCGTTGGTTTGAAAGAGCAGCCCAAGGGGAAATGGTTCTGTTCCGACTGTGCTGTCTCAAAAAGTCGGCGGAAAGCTAGTTGA 732 42.49 MCVIFCTDLDSLPNILQKKYALLRDLDKSLQELIKQNEQRCEQEIEDIKRGVKSGISSSKASPLRFSDEALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKKIDEELRRERDAVSGLPTSSIDGSIKSGRGNESGKGGRKKTRQATAAAVAAISAATEVAIQAVSNPIGTELDLPLDPNEPTYCFCNQVSFGEMVACDNPDCKIEWFHFGCVGLKEQPKGKWFCSDCAVSKSRRKAS 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18252247 18255857 - Bma019655.1 Bma04g01035 81404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01035 243 PANTHER INHIBITOR OF GROWTH PROTEIN 8 149 IPR028651 -
Bma04g01035 243 SUPERFAMILY FYVE/PHD zinc finger 177 236 IPR011011 -
Bma04g01035 243 ProSiteProfiles Zinc finger PHD-type profile. 187 236 IPR019787 -
Bma04g01035 243 SMART ING_2 5 109 IPR024610 -
Bma04g01035 243 Coils Coil 95 119 - -
Bma04g01035 243 Gene3D - 4 107 - -
Bma04g01035 243 PANTHER INHIBITOR OF GROWTH PROTEIN 146 240 IPR028651 -
Bma04g01035 243 SMART PHD_3 189 234 IPR001965 -
Bma04g01035 243 Pfam Inhibitor of growth proteins N-terminal histone-binding 7 108 IPR024610 -
Bma04g01035 243 CDD PHD_Yng1p_like 189 235 - -
Bma04g01035 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 237 IPR013083 -
Bma04g01035 243 PANTHER INHIBITOR OF GROWTH PROTEIN 4 146 240 - -
Bma04g01035 243 MobiDBLite consensus disorder prediction 118 149 - -
Bma04g01035 243 PANTHER INHIBITOR OF GROWTH PROTEIN 4 8 149 - -
Bma04g01035 243 ProSitePatterns Zinc finger PHD-type signature. 190 233 IPR019786 -
Bma04g01035 243 CDD ING_plant 11 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01035 K11346 ING4; inhibitor of growth protein 4 - tcc:18602825 360.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00748 Bma-Chr4:8054896 Bma04g01035 Bma-Chr4:18252247 1.95E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g829 . Blo12g00131 Bda03g01109 . Bpe04g01054 . Bma04g01035 . . . Cma06g01275 . Car06g01096 . . Cpe08g00372 . Bhi01g00022 . . . . . . . . . . . . . Cone14ag0202 Cone15ag0220 . . Lsi05g01798 . . Cme06g00422 . . . . . . . . . Cmo06g01284 . . . . . . . . . . . . . . Cla05g00384 Cam05g0418 Cec05g0423 Cco05g0423 Clacu05g0413 Cmu05g0396 Cre05g0458 . Csa03g01141 Chy06g00407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004676 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01035 Bma_Chr04 FPKM 14.053326 14.623024 11.772116 12.370591 33.87944 35.245445 34.243767 34.560108 31.05172 30.609934