Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g01041 | ATGGTGATTCAATTGAAACAAGAGTTGATTGTGAATAGCTTTAAAACTATTGATGGTCGTGGGGTCAACGTCCACATTGCAAATGGAGCTTGTATTACCATCCAATATGTCACTAATGTCATTATCCACGGCCTGCACATTCATGATTGCAAGCCCACTGGTAATGCCATGGTGAGGAGCTCACCAAGTCATTACGGGTGGAGGACAATGGCCGATGGTGATGCCATCTCCATTTTCGGGTCTAGCCATATATGGGTTGATCACAATTCGCTCTCTCATTGCGCTGATGGCCTTGTTGATGCTGTGATGGGCTCAACTGCAATTACAATTTCAAACAATCACTTCACCCACCACAATGAGGTGATGCTGTTAGGCCACAGTGATTCGTATACAAAAGACAAGCAAATGCAAGTTACCATTGCTTTTAACCATTTTGGTGAAGGACTCATCCAGAGAATGCCAAGGTTGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTACGCTATTGGTGGAAGCGGTAACCCAACCATCAACAGCCAGGGCAACAGATACGCAGCTCCAACAAACCCTTTTGCGAAAGAGGTGACAAAGAGGGTCGAAACAGCCCAAAGTGAGTGGAAGAATTGGAATTGGAGATCAGAGGGAGACCTGTTGTTGAAGGGTGCATACTTCACTCCATCTGGTGCTGGAGCTTCTTCAAACTATGCCAGGGCCTCAAGCTTGGGAGCGAAGTCTTCTTCCATGGTTGGATCCATAACATCCAGTGCCGGTGCTCTTCCTTGTCGTAGAGGCCATCAATGTTAG | 828 | 46.14 | MVIQLKQELIVNSFKTIDGRGVNVHIANGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAFNHFGEGLIQRMPRLCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQGNRYAAPTNPFAKEVTKRVETAQSEWKNWNWRSEGDLLLKGAYFTPSGAGASSNYARASSLGAKSSSMVGSITSSAGALPCRRGHQC | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 18879376 | 18880500 | - | Bma019668.1 | Bma04g01041 | 81410 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g01041 | 275 | PANTHER | PECTATE LYASE 18-RELATED | 1 | 272 | IPR045032 | GO:0030570 | |
Bma04g01041 | 275 | Pfam | Pectate lyase | 7 | 190 | IPR002022 | - | |
Bma04g01041 | 275 | SMART | amb_all | 1 | 198 | IPR002022 | - | |
Bma04g01041 | 275 | PRINTS | Pollen allergen Amb family signature | 72 | 93 | IPR018082 | - | |
Bma04g01041 | 275 | PRINTS | Pollen allergen Amb family signature | 8 | 24 | IPR018082 | - | |
Bma04g01041 | 275 | PRINTS | Pollen allergen Amb family signature | 217 | 241 | IPR018082 | - | |
Bma04g01041 | 275 | PRINTS | Pollen allergen Amb family signature | 246 | 269 | IPR018082 | - | |
Bma04g01041 | 275 | PRINTS | Pollen allergen Amb family signature | 153 | 172 | IPR018082 | - | |
Bma04g01041 | 275 | PRINTS | Pollen allergen Amb family signature | 175 | 194 | IPR018082 | - | |
Bma04g01041 | 275 | Gene3D | - | 1 | 268 | IPR012334 | - | |
Bma04g01041 | 275 | SUPERFAMILY | Pectin lyase-like | 1 | 275 | IPR011050 | - | |
Bma04g01041 | 275 | PANTHER | OS04G0137100 PROTEIN | 1 | 272 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g01041 | Bma-Chr4:18879376 | Bma13g00744 | Bma-Chr13:23362741 | 0 | dispersed | |
Bma04g01041 | Bma-Chr4:18879376 | Bma04g01050 | Bma-Chr4:19126066 | 0 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g01041 | K01728 | - | jre:108995893 | 538.495 |