Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01041 ATGGTGATTCAATTGAAACAAGAGTTGATTGTGAATAGCTTTAAAACTATTGATGGTCGTGGGGTCAACGTCCACATTGCAAATGGAGCTTGTATTACCATCCAATATGTCACTAATGTCATTATCCACGGCCTGCACATTCATGATTGCAAGCCCACTGGTAATGCCATGGTGAGGAGCTCACCAAGTCATTACGGGTGGAGGACAATGGCCGATGGTGATGCCATCTCCATTTTCGGGTCTAGCCATATATGGGTTGATCACAATTCGCTCTCTCATTGCGCTGATGGCCTTGTTGATGCTGTGATGGGCTCAACTGCAATTACAATTTCAAACAATCACTTCACCCACCACAATGAGGTGATGCTGTTAGGCCACAGTGATTCGTATACAAAAGACAAGCAAATGCAAGTTACCATTGCTTTTAACCATTTTGGTGAAGGACTCATCCAGAGAATGCCAAGGTTGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTACGCTATTGGTGGAAGCGGTAACCCAACCATCAACAGCCAGGGCAACAGATACGCAGCTCCAACAAACCCTTTTGCGAAAGAGGTGACAAAGAGGGTCGAAACAGCCCAAAGTGAGTGGAAGAATTGGAATTGGAGATCAGAGGGAGACCTGTTGTTGAAGGGTGCATACTTCACTCCATCTGGTGCTGGAGCTTCTTCAAACTATGCCAGGGCCTCAAGCTTGGGAGCGAAGTCTTCTTCCATGGTTGGATCCATAACATCCAGTGCCGGTGCTCTTCCTTGTCGTAGAGGCCATCAATGTTAG 828 46.14 MVIQLKQELIVNSFKTIDGRGVNVHIANGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAFNHFGEGLIQRMPRLCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQGNRYAAPTNPFAKEVTKRVETAQSEWKNWNWRSEGDLLLKGAYFTPSGAGASSNYARASSLGAKSSSMVGSITSSAGALPCRRGHQC 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18879376 18880500 - Bma019668.1 Bma04g01041 81410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01041 275 PANTHER PECTATE LYASE 18-RELATED 1 272 IPR045032 GO:0030570
Bma04g01041 275 Pfam Pectate lyase 7 190 IPR002022 -
Bma04g01041 275 SMART amb_all 1 198 IPR002022 -
Bma04g01041 275 PRINTS Pollen allergen Amb family signature 72 93 IPR018082 -
Bma04g01041 275 PRINTS Pollen allergen Amb family signature 8 24 IPR018082 -
Bma04g01041 275 PRINTS Pollen allergen Amb family signature 217 241 IPR018082 -
Bma04g01041 275 PRINTS Pollen allergen Amb family signature 246 269 IPR018082 -
Bma04g01041 275 PRINTS Pollen allergen Amb family signature 153 172 IPR018082 -
Bma04g01041 275 PRINTS Pollen allergen Amb family signature 175 194 IPR018082 -
Bma04g01041 275 Gene3D - 1 268 IPR012334 -
Bma04g01041 275 SUPERFAMILY Pectin lyase-like 1 275 IPR011050 -
Bma04g01041 275 PANTHER OS04G0137100 PROTEIN 1 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01041 Bma-Chr4:18879376 Bma13g00744 Bma-Chr13:23362741 0 dispersed
Bma04g01041 Bma-Chr4:18879376 Bma04g01050 Bma-Chr4:19126066 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01041 K01728 - jre:108995893 538.495