Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01045 AAAATGGTTACTGTGGAAGAAGTGCGCAGAGCTCAGAGGGCTGAGGGACCAGCCACCGTCTTGGCCATCGGAACTGCCACTCCACCGAACTGCGTTGATCAGAGCACTTACCCGGATTACTACTTTCGCATCACAAACAGTGAACACAAGACTGAACTCAAAGAGAAGTTCAAGCGCATGTGCGAAAAGTCGATGATCAAGACACGGTATATGTACTTGACGGAGGAGATTTTGAAGGAGAACCCCCATGTTTGTGCCTACGAAGCTCCTTCTCTCGACGCTAGGCAAGATATGGTGGTTGTGGAGGTTCCCCGGCTCGGGAAAGAGGCAGCGGCGAAAGCCATTAAAGAGTGGGGACAGCCCAAATCCAAGATTACCCACGTTGTTTTCTGCACCACAAGTGGAGTCGATATGCCCGGAGCCGATTATCAGCTCACCAAGCTCTTAGGCCTCCGTCCGTCGGTCAAACGTCTTATGATGTACCAGCAAGGCTGCTTCGCCGGAGGCACTGTTCTCAGGATTGCCAAGGATCTTGCTGAGAATAACAAGGGTGCTCGTGTTCTCGTGGTTTGCTCGGAGATTACCGCCGTCACCTTCCGTGGTCCGAGTGAAACCCACCTCGACAGTCTCGTAGGACAGGCTCTTTTCGGCGACGGCTCCGCTGCTGTCATCGTCGGCTCGGACCCGATCCCCGGAGTGGAGAAGCCCTTGTTCGAAATGGTCTCCGCCGCCCAAACTATCCTCCCAGACAGTGACGGCGCCATCGACGGCCATCTACGGGAAGTGGGCTTGACTTTCCACCTTCTGAAAGACGTCCCCGGATTAATCTCGAAGAACATTGAGAAAAGCTTGGTGGAGGCGTTCAAGCCATTGGGTATCTCGGACTGGAACTCCATTTTCTGGATCGCCCACCCCGGAGGTCCGGCAATCTTGGACCAGGTAGAGCAAAAACTGGGTCTGAAAGAAGAGAAAATGCGTGCGACCAGACAAGTGCTGAGCGACTACGGAAACATGTCAAGTGCCTGCGTTTTGTTCATATTGGACGAGATGAGGAGGAAGTCAGCCGCGGAAGGGCTGAAGACGACTGGAGAAGGGCTGGAGTGGGGGGTTCTGTTCGGATTCGGGCCGGGTCTGACGGTGGAGACGGTGGTCCTGCACAGTGTCCAGGCTTAG 1173 54.65 KMVTVEEVRRAQRAEGPATVLAIGTATPPNCVDQSTYPDYYFRITNSEHKTELKEKFKRMCEKSMIKTRYMYLTEEILKENPHVCAYEAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRIAKDLAENNKGARVLVVCSEITAVTFRGPSETHLDSLVGQALFGDGSAAVIVGSDPIPGVEKPLFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFKPLGISDWNSIFWIAHPGGPAILDQVEQKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRRKSAAEGLKTTGEGLEWGVLFGFGPGLTVETVVLHSVQA 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18978480 18979759 + Bma019672.1 Bma04g01045 81414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01045 390 Coils Coil 311 331 - -
Bma04g01045 390 Pfam Chalcone and stilbene synthases, N-terminal domain 6 229 IPR001099 -
Bma04g01045 390 SUPERFAMILY Thiolase-like 2 234 IPR016039 GO:0016746
Bma04g01045 390 CDD CHS_like 17 385 - -
Bma04g01045 390 Pfam Chalcone and stilbene synthases, C-terminal domain 239 388 IPR012328 -
Bma04g01045 390 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 3 389 IPR011141 GO:0009058|GO:0016747
Bma04g01045 390 ProSitePatterns Chalcone and stilbene synthases active site. 157 173 IPR018088 GO:0009058|GO:0016746
Bma04g01045 390 PIRSF PKS_III 3 390 IPR011141 GO:0009058|GO:0016747
Bma04g01045 390 PANTHER CHALCONE SYNTHASE 2 3 389 - -
Bma04g01045 390 Gene3D - 1 236 IPR016039 GO:0016746
Bma04g01045 390 Gene3D - 237 390 IPR016039 GO:0016746
Bma04g01045 390 SUPERFAMILY Thiolase-like 236 387 IPR016039 GO:0016746
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01045 K00660 CHS; chalcone synthase [EC:2.3.1.74] - jre:108988452 728.783
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g01045 Bma05g01285 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01028 Bma-Chr2:51707631 Bma04g01045 Bma-Chr4:18978480 4.78E-96 dispersed
Bma04g01045 Bma-Chr4:18978480 Bma05g01279 Bma-Chr5:52116194 0 dispersed
Bma04g01042 Bma-Chr4:18895713 Bma04g01045 Bma-Chr4:18978480 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g884 Blo01g00322 . . Bda08g00027 . . Bma04g01045 Bma05g01285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g01133 . . . . . . . Cma17g00113 . . Cpe12g00099 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000620 7 3 7 12 3 2 1 2 2 1 1 2 3 2 1 2 2 4 3 2 1 3 2 2 2 6 2 4 3 16 103
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01045 Bma_Chr04 FPKM 12.283123 14.370737 15.838096 15.092513 12.756996 12.348322 14.142843 13.774591 14.559868 14.521574