Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01050 AGCATCCACAACCACACCGAAAGAAGGAAGCTGGGTTATTTTTCATGTGGAACTGGAAATCCGATTGATGATTGCTGGAGGTGTGACCCCAACTGGCATCAAAACCGCAAACGCCTCGCAAACTGTGGAATTGGCTTTGGAAGAAACGCTGTTGGTGGTCGAAATGGTGGATTTTATGTTGTCACCGATCATCAAGATGATGACCCTGTCAACCCCAAGCCTGGCACTTTGCGCCATGCCGTAATTCAGGACAAACCTCTCTGGATCGTGTTTAAGCGAGACATGGTGATTCAATTGAAACAAGAGTTGATTGTGAATAGCTTTAAAACTATTGATGGTCGTGGGGTCAACGTCCACATTGCAAATGGAGCTTGTATTACCATCCAATATGTCACTAATGTTATTATCCACGGCCTGCACATTCATGATTGCAAGCCCACTGGTAATGCCATGGTGAGGAGCTCACCAAGTCATTACGGGTGGAGGACAATGGCCGATGGTGATGCCATCTCCATTTTCGGGTCTAGCCATATATGGGTTGATCACAATTCGCTCTCTCATTGCGCTGATGGCCTTGTTGATGCTGTGATGGGCTCAACTGCAATTACAATTTCAAACAATCACTTCACCCACCACAATGAGGTGATGCTGTTAGGCCACAGTGATTCGTATACAAAAGACAAGCAAATGCAAGTTACCATTGCTTTTAACCATTTTGGTGAAGGACTCATCCAGAGAATGCCAAGGTTGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTACGCTATTGGTGGAAGCGGTAACCCAACCATCAACAGCCAGGGCAACAGATACGCAGCTCCAACAAACCCTTTTGCGAAAGAGGTGACAAAGAGGGTCGAAACAGCCCAAAGTGAGTGGAAGAATTGGAATTGGAGATCAGAGGGAGACCTGTTGTTGAATGGTGCATACTTCACTCCATCTGGTGCTGGAGCTTCTTCAAACTATGCCAGGGCCTCAAGCTTGGGAGCGAAGTCTTCTTCCATGGTTGGATCCATAACATCCAGTGCCGGTGCTCTTCCTTGTCGTAGAGGCCATCAATGTTAG 1110 46.58 SIHNHTERRKLGYFSCGTGNPIDDCWRCDPNWHQNRKRLANCGIGFGRNAVGGRNGGFYVVTDHQDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGVNVHIANGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAFNHFGEGLIQRMPRLCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQGNRYAAPTNPFAKEVTKRVETAQSEWKNWNWRSEGDLLLNGAYFTPSGAGASSNYARASSLGAKSSSMVGSITSSAGALPCRRGHQC 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19126066 19127472 + Bma019677.1 Bma04g01050 81419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01050 369 PANTHER PECTATE LYASE 4 366 - -
Bma04g01050 369 Pfam Pectate lyase 100 284 IPR002022 -
Bma04g01050 369 PANTHER PECTATE LYASE 18-RELATED 4 366 IPR045032 GO:0030570
Bma04g01050 369 SMART amb_all 94 292 IPR002022 -
Bma04g01050 369 Gene3D - 19 362 IPR012334 -
Bma04g01050 369 PRINTS Pollen allergen Amb family signature 102 118 IPR018082 -
Bma04g01050 369 PRINTS Pollen allergen Amb family signature 166 187 IPR018082 -
Bma04g01050 369 PRINTS Pollen allergen Amb family signature 247 266 IPR018082 -
Bma04g01050 369 PRINTS Pollen allergen Amb family signature 311 335 IPR018082 -
Bma04g01050 369 PRINTS Pollen allergen Amb family signature 66 91 IPR018082 -
Bma04g01050 369 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Bma04g01050 369 PRINTS Pollen allergen Amb family signature 42 59 IPR018082 -
Bma04g01050 369 PRINTS Pollen allergen Amb family signature 340 363 IPR018082 -
Bma04g01050 369 SUPERFAMILY Pectin lyase-like 5 364 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00362 Bma-Chr3:2697882 Bma04g01050 Bma-Chr4:19126066 4.39E-177 dispersed
Bma04g01050 Bma-Chr4:19126066 Bma06g00238 Bma-Chr6:3163295 0 dispersed
Bma06g00671 Bma-Chr6:35999301 Bma04g01050 Bma-Chr4:19126066 2.73E-168 dispersed
Bma08g00920 Bma-Chr8:48179296 Bma04g01050 Bma-Chr4:19126066 3.10E-172 dispersed
Bma04g01041 Bma-Chr4:18879376 Bma04g01050 Bma-Chr4:19126066 0 proximal
Bma13g00744 Bma-Chr13:23362741 Bma04g01050 Bma-Chr4:19126066 0 transposed
Bma14g01573 Bma-Chr14:32423807 Bma04g01050 Bma-Chr4:19126066 4.00E-150 transposed
Bma04g01050 Bma-Chr4:19126066 Bma05g01283 Bma-Chr5:52172390 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01050 K01728 - cpap:110813995 723.776