Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01053 ATGGCGTCAAGTTCTAGTGTCAGCAAAAGTCCATTACCAGTGACAGAAACATCTTCAAACTCGCATCCATACCCTCCGCCTCTTGCAACATATGAAGATCTTGTAGCCAGTCCTGAGCTTTTCATGGCTACTTTGAAAATGCTCCATGCTTCTCTGAGAACCAAGTTTATGATCCCCATTATAGGGGGGAAAGATCTGGACTTGCATAGGCTTTTTGCTGAAGTTACTAGACTATCATCCCATGTTTTGATTTATCAGATTATCAAACAAAGAAGATGGAAGGAAGTTACTGCAGTTTTCGACTTCCCGGCCACGGCTACAAATGCATCATTTGTGTTGAGAAAGTATTATTTTTCACTGCTTTATCACTTCGAACAAATTTACTTCTTCAAAGCTCGAGAATATTCGCCTAACGTAGCCGGTGTGTTTGCGCCTAAGATCATACCTTTCTCTGGACAGATCTTTCGTCTTATGTGTTCTTTCTTTGAAGGATCATCAAGTGGAAATTTTGTTACTGGTGTGATTGACGCGAAATTCGAAAGTGGATATCTCGTGACAGTTTCAATAGGCTCGGAATTATTAAAAGGCGTTCTTTACCAATTGCCACCGGATCAAGTGGACCCAGTGGCTCATGGCGTAGGTTCCGGTGGTCAAGACATCACTCCCGTGCAGCCGGTCGTCCACCGTCGCCGGAGGAGAAAGAAGTCGGAGATTAAACGACGGGACCCTGCCCATCCAAAGCCGAACAGAAGTGGCTACAACTTTTTCTTTGCAGAGCAACATGCTAGGCTGAAACCTCTACACCCTGGAAAAGATTAG 819 44.32 MASSSSVSKSPLPVTETSSNSHPYPPPLATYEDLVASPELFMATLKMLHASLRTKFMIPIIGGKDLDLHRLFAEVTRLSSHVLIYQIIKQRRWKEVTAVFDFPATATNASFVLRKYYFSLLYHFEQIYFFKAREYSPNVAGVFAPKIIPFSGQIFRLMCSFFEGSSSGNFVTGVIDAKFESGYLVTVSIGSELLKGVLYQLPPDQVDPVAHGVGSGGQDITPVQPVVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19598462 19599788 + Bma019686.1 Bma04g01053 81422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01053 272 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 4 272 - -
Bma04g01053 272 SUPERFAMILY ARID-like 33 132 IPR036431 GO:0003677
Bma04g01053 272 SMART ARID_2 32 125 - -
Bma04g01053 272 MobiDBLite consensus disorder prediction 1 25 - -
Bma04g01053 272 SUPERFAMILY HMG-box 233 271 IPR036910 -
Bma04g01053 272 MobiDBLite consensus disorder prediction 211 254 - -
Bma04g01053 272 CDD ARID_HMGB9-like 37 125 IPR045303 GO:0003677
Bma04g01053 272 SMART bright_3 36 130 IPR001606 GO:0003677
Bma04g01053 272 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 272 - -
Bma04g01053 272 Pfam ARID/BRIGHT DNA binding domain 39 125 IPR001606 GO:0003677
Bma04g01053 272 Gene3D - 28 138 IPR036431 GO:0003677
Bma04g01053 272 ProSiteProfiles ARID domain profile. 35 129 IPR001606 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01053 Bma05g01290 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01053 Bma-Chr4:19598462 Bma13g01143 Bma-Chr13:44620708 4.25E-72 dispersed
Bma04g01053 Bma-Chr4:19598462 Bma05g01290 Bma-Chr5:52272695 2.44E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57221 PF01388 ARID 2.40E-12 CL0123 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01053 - - jre:109003447 307.76