Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g01053 | ATGGCGTCAAGTTCTAGTGTCAGCAAAAGTCCATTACCAGTGACAGAAACATCTTCAAACTCGCATCCATACCCTCCGCCTCTTGCAACATATGAAGATCTTGTAGCCAGTCCTGAGCTTTTCATGGCTACTTTGAAAATGCTCCATGCTTCTCTGAGAACCAAGTTTATGATCCCCATTATAGGGGGGAAAGATCTGGACTTGCATAGGCTTTTTGCTGAAGTTACTAGACTATCATCCCATGTTTTGATTTATCAGATTATCAAACAAAGAAGATGGAAGGAAGTTACTGCAGTTTTCGACTTCCCGGCCACGGCTACAAATGCATCATTTGTGTTGAGAAAGTATTATTTTTCACTGCTTTATCACTTCGAACAAATTTACTTCTTCAAAGCTCGAGAATATTCGCCTAACGTAGCCGGTGTGTTTGCGCCTAAGATCATACCTTTCTCTGGACAGATCTTTCGTCTTATGTGTTCTTTCTTTGAAGGATCATCAAGTGGAAATTTTGTTACTGGTGTGATTGACGCGAAATTCGAAAGTGGATATCTCGTGACAGTTTCAATAGGCTCGGAATTATTAAAAGGCGTTCTTTACCAATTGCCACCGGATCAAGTGGACCCAGTGGCTCATGGCGTAGGTTCCGGTGGTCAAGACATCACTCCCGTGCAGCCGGTCGTCCACCGTCGCCGGAGGAGAAAGAAGTCGGAGATTAAACGACGGGACCCTGCCCATCCAAAGCCGAACAGAAGTGGCTACAACTTTTTCTTTGCAGAGCAACATGCTAGGCTGAAACCTCTACACCCTGGAAAAGATTAG | 819 | 44.32 | MASSSSVSKSPLPVTETSSNSHPYPPPLATYEDLVASPELFMATLKMLHASLRTKFMIPIIGGKDLDLHRLFAEVTRLSSHVLIYQIIKQRRWKEVTAVFDFPATATNASFVLRKYYFSLLYHFEQIYFFKAREYSPNVAGVFAPKIIPFSGQIFRLMCSFFEGSSSGNFVTGVIDAKFESGYLVTVSIGSELLKGVLYQLPPDQVDPVAHGVGSGGQDITPVQPVVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD | 272 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 19598462 | 19599788 | + | Bma019686.1 | Bma04g01053 | 81422 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g01053 | 272 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 15 | 4 | 272 | - | - | |
Bma04g01053 | 272 | SUPERFAMILY | ARID-like | 33 | 132 | IPR036431 | GO:0003677 | |
Bma04g01053 | 272 | SMART | ARID_2 | 32 | 125 | - | - | |
Bma04g01053 | 272 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Bma04g01053 | 272 | SUPERFAMILY | HMG-box | 233 | 271 | IPR036910 | - | |
Bma04g01053 | 272 | MobiDBLite | consensus disorder prediction | 211 | 254 | - | - | |
Bma04g01053 | 272 | CDD | ARID_HMGB9-like | 37 | 125 | IPR045303 | GO:0003677 | |
Bma04g01053 | 272 | SMART | bright_3 | 36 | 130 | IPR001606 | GO:0003677 | |
Bma04g01053 | 272 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 4 | 272 | - | - | |
Bma04g01053 | 272 | Pfam | ARID/BRIGHT DNA binding domain | 39 | 125 | IPR001606 | GO:0003677 | |
Bma04g01053 | 272 | Gene3D | - | 28 | 138 | IPR036431 | GO:0003677 | |
Bma04g01053 | 272 | ProSiteProfiles | ARID domain profile. | 35 | 129 | IPR001606 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma04g01053 | Bma05g01290 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g01053 | Bma-Chr4:19598462 | Bma13g01143 | Bma-Chr13:44620708 | 4.25E-72 | dispersed | |
Bma04g01053 | Bma-Chr4:19598462 | Bma05g01290 | Bma-Chr5:52272695 | 2.44E-107 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57221 | PF01388 | ARID | 2.40E-12 | CL0123 | Bma | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g01053 | - | - | jre:109003447 | 307.76 |