Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01053 ATGGCGTCAAGTTCTAGTGTCAGCAAAAGTCCATTACCAGTGACAGAAACATCTTCAAACTCGCATCCATACCCTCCGCCTCTTGCAACATATGAAGATCTTGTAGCCAGTCCTGAGCTTTTCATGGCTACTTTGAAAATGCTCCATGCTTCTCTGAGAACCAAGTTTATGATCCCCATTATAGGGGGGAAAGATCTGGACTTGCATAGGCTTTTTGCTGAAGTTACTAGACTATCATCCCATGTTTTGATTTATCAGATTATCAAACAAAGAAGATGGAAGGAAGTTACTGCAGTTTTCGACTTCCCGGCCACGGCTACAAATGCATCATTTGTGTTGAGAAAGTATTATTTTTCACTGCTTTATCACTTCGAACAAATTTACTTCTTCAAAGCTCGAGAATATTCGCCTAACGTAGCCGGTGTGTTTGCGCCTAAGATCATACCTTTCTCTGGACAGATCTTTCGTCTTATGTGTTCTTTCTTTGAAGGATCATCAAGTGGAAATTTTGTTACTGGTGTGATTGACGCGAAATTCGAAAGTGGATATCTCGTGACAGTTTCAATAGGCTCGGAATTATTAAAAGGCGTTCTTTACCAATTGCCACCGGATCAAGTGGACCCAGTGGCTCATGGCGTAGGTTCCGGTGGTCAAGACATCACTCCCGTGCAGCCGGTCGTCCACCGTCGCCGGAGGAGAAAGAAGTCGGAGATTAAACGACGGGACCCTGCCCATCCAAAGCCGAACAGAAGTGGCTACAACTTTTTCTTTGCAGAGCAACATGCTAGGCTGAAACCTCTACACCCTGGAAAAGATTAG 819 44.32 MASSSSVSKSPLPVTETSSNSHPYPPPLATYEDLVASPELFMATLKMLHASLRTKFMIPIIGGKDLDLHRLFAEVTRLSSHVLIYQIIKQRRWKEVTAVFDFPATATNASFVLRKYYFSLLYHFEQIYFFKAREYSPNVAGVFAPKIIPFSGQIFRLMCSFFEGSSSGNFVTGVIDAKFESGYLVTVSIGSELLKGVLYQLPPDQVDPVAHGVGSGGQDITPVQPVVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19598462 19599788 + Bma019686.1 Bma04g01053 81422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01053 272 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 4 272 - -
Bma04g01053 272 SUPERFAMILY ARID-like 33 132 IPR036431 GO:0003677
Bma04g01053 272 SMART ARID_2 32 125 - -
Bma04g01053 272 MobiDBLite consensus disorder prediction 1 25 - -
Bma04g01053 272 SUPERFAMILY HMG-box 233 271 IPR036910 -
Bma04g01053 272 MobiDBLite consensus disorder prediction 211 254 - -
Bma04g01053 272 CDD ARID_HMGB9-like 37 125 IPR045303 GO:0003677
Bma04g01053 272 SMART bright_3 36 130 IPR001606 GO:0003677
Bma04g01053 272 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 272 - -
Bma04g01053 272 Pfam ARID/BRIGHT DNA binding domain 39 125 IPR001606 GO:0003677
Bma04g01053 272 Gene3D - 28 138 IPR036431 GO:0003677
Bma04g01053 272 ProSiteProfiles ARID domain profile. 35 129 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01053 - - - jre:109003447 307.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g01053 Bma05g01290 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01053 Bma-Chr4:19598462 Bma13g01143 Bma-Chr13:44620708 4.25E-72 dispersed
Bma04g01053 Bma-Chr4:19598462 Bma05g01290 Bma-Chr5:52272695 2.44E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g01290 BCT 27 340 ARID Transcription Factor Family AT1G04880 60.8 1.6e-98 356.7
Bma04g01053 BCT 27 272 ARID Transcription Factor Family AT1G04880 55.5 2.1e-69 260.0
Bma01g00689 . 151 430 ARID Transcription Factor Family AT1G20910 66.4 1.2e-100 363.6
Bma15g00913 . 37 329 ARID Transcription Factor Family AT1G20910 53.8 3.0e-80 295.8
Bma01g02389 . 1 295 ARID Transcription Factor Family AT1G76110 59.4 8.9e-89 323.9
Bma01g00689 . 119 460 ARID Transcription Factor Family AT1G76510 67.0 2.4e-123 439.1
Bma15g00913 . 14 359 ARID Transcription Factor Family AT1G76510 55.7 4.5e-101 365.2
Bma13g01143 . 42 324 ARID Transcription Factor Family AT3G13350 52.2 1.7e-81 299.7
Bma10g00669 . 2 801 ARID Transcription Factor Family AT3G43240 55.3 6.2e-252 867.1
Bma10g00710 . 1 774 ARID Transcription Factor Family AT3G43240 56.6 6.2e-252 867.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57221 PF01388 ARID 2.40E-12 CL0123 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01053 Bma_Chr04 FPKM 11.311131 12.239009 12.08563 13.652111 12.147214 9.473845 14.85001 21.480574 19.824703 22.326391