Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01055 ATGGCAGCCCATTTCTCTGGGCTACTCCTCCTCCTCCTCTTCCTACTCTTCTCGCCAAACAAAACCATACTCCCTGCCCAAGCCTCGTACTGCGTTGTTCGAAGCGACGCCAGCACTCAGGCGCTGCAGACAGCCATCGACTACGCGTGCGGCGCTGGGGCGGACTGCGCCCCGCTTCAGTCGACCGGCCTCTGCTTCCTCCCTAACACCATCCAAGCTCACGCCTCCTACGCCTTCAATAGCTACTACCAGCGCAAGGCTATGGCTCCTGGCTCTTGTGACTTTGCTGGCACTGCAACTATCGCTCAGACCGATCCTAGTCAGTTCTATTTTTTTCTTTCATCTTTCTCCTTCAGTCTTCTTCCCTCTGTTTTATTTTACATTATTTTTTAA 393 53.18 MAAHFSGLLLLLLFLLFSPNKTILPAQASYCVVRSDASTQALQTAIDYACGAGADCAPLQSTGLCFLPNTIQAHASYAFNSYYQRKAMAPGSCDFAGTATIAQTDPSQFYFFLSSFSFSLLPSVLFYIIF 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19698362 19698754 + Bma019690.1 Bma04g01055 81424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01055 130 Pfam X8 domain 30 100 IPR012946 -
Bma04g01055 130 Gene3D - 25 111 - -
Bma04g01055 130 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN 10 117 - -
Bma04g01055 130 SMART X8_cls 29 111 IPR012946 -
Bma04g01055 130 PANTHER BETA-1,3 GLUCANASE 10 117 IPR044788 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01055 - - - pdul:117614956 153.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00121 Bma-Chr1:1212632 Bma04g01055 Bma-Chr4:19698362 2.83E-27 dispersed
Bma04g01055 Bma-Chr4:19698362 Bma06g00735 Bma-Chr6:38357061 2.18E-28 dispersed
Bma04g01055 Bma-Chr4:19698362 Bma12g00970 Bma-Chr12:41688295 1.04E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g906 . Blo12g00115 Bda03g01126 . . . Bma04g01055 . Cmo08g00991 . . . . . . . . . . . . . . . Cla06g00760 . Cec06g0822 . Clacu06g0812 Cmu06g0786 . . . . . . . Chy05g00560 . . . . . . . . . Sed04g2068 . . Cma08g01021 . Car08g00898 . . Cpe17g00255 Bhi12g01498 Tan06g2300 Cmetu05g0712 Lac12g2044 Hepe03g0359 . Lcy13g0466 . . . . . . . Lsi09g01139 . . Cme05g00718
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009076 1 1 1 1 0 1 1 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01055 Bma_Chr04 FPKM 6.878049 7.702041 27.284777 30.709383 14.020442 15.99428 18.592304 47.030926 38.959839 38.880764