Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01056 ATGAGTTTTTCTTTGTGGGATGCACTGATACAGAACCCACAAATGCGTTTCTTCCATTGCTGCCTGATTGGACTCTTGCTATTGCTTACCTCGAGCTTCAGATGCGTTAATGGACGAATACCAACTACGTTAGATGGTCCTTTTCAGTCTGTTACTGCCCCTCTTGACAAGAGCTTCAGAGGCAAGGCCAAGGATTTGCCCGCAACCGACCGACGGGTCCAGAAGATTGGCGGATGTTTCGACCCTGAACAAATCTCTGTCTCTCTATCTCTACACTATCATTCTGTCTGGATTTCTTGGATTACAGGTGATTTTCAGATTGGAGACAACATTAAACCTCTAGATCCTGGAAGCGTTGCCAGCATCGTCAATTACGGAGAATTCGAGTTGCCATTGACTAACACTGCAGAGGGCTATTCCCTCGTATATAACCAGCTTTACCCTTTTAAGGGCCTGAAGAACTACACCTCAGGAATTATACACCATGTTCGACTCACAGGATTAAATGCAGATACATTATACCAGTATCAATGTGGAGATCCTTTTATAGGAGCAATGAGCGATGTGTTCTATTTCAAGATGATGCCGATATCAGGCCCTCGTAGCTACCCAAACCGAATAGCCATTGTAGGGGACCTCGGCCTTACTTATAACACAACATCGACAGTCAATCACATCTTGATCAACCATCCCGATCTGCTTCTTCTCGTCGGAGATGTTACTTATGCCAACTTATATCTTACCAACGGAACGGGGTCAGATTGTTATTTATGCTCTTTTCCAAAAACTCCCATTCATGAAACTTATCAGCCTCGTTGGGATTACTGGGGAAGGTTTATGCAGCCTTTGATCTCGAAAGTTCCATTTATGGTGGTGGAAGGGAATCATGATATCGAAGAACAAATTGAGGAAAGACAATTTGTTTCGTACAGCTCTCGATTTGCCTTTCCATCTGTAGAGAGCGGATCGTTTTCTACACTCTACTATTCCTTCAACGCGGGTGGCATTCACTTTGTAATGCTCGGGGCCTACACTTCATATCATAAATCTGGGGACCAATACAAGTGGTTGGAGCGAGATCTGGCTCGAGTGGATCGAGATGTGACACCATGGTTGATAGCAACATGGCATCCGCCCTGGTACAGCACTTACACGGCACACTATAGAGAAGCAGAGTGCATGAGAGTTTCAATGGAAGATTTGCTCTACACTTATCGAGTCGACATCGTTTTCAATGGGCACGTTCATGCATATGAGAGGTCACATCGAGTGTACAACTACAAGTTGGATCGTTGCGGTCCAATTTATATCACGGTAGGCGATGGAGGGAATCGAGAGAAGATGGCGATTTTGCATGCGGACGAGCCTGGAAATTGTCCGAGACCGCATTCAACATCGAATAAATCTGTGGGTGGCTTGTGTGCGTTCAATTTCACTTCGGGCCCTGCTAAGGGAAAGTTTTGCTGGGATCGGCAGCCTATTTATAGCGCGTATCGGGAAAGTAGTTTTGGACATGGGATTTTAGAGGTGAAGAATGAGACTCATGCGTTGTGGACATGGCATAGAAATAAGGATTCGTATAAAGTTGCTGGAGATCAGATTTACATTGTGAGAGAACCAGAAATCTGCGCAGTTGAATCTAAAAGATCTTGA 1653 44.83 MSFSLWDALIQNPQMRFFHCCLIGLLLLLTSSFRCVNGRIPTTLDGPFQSVTAPLDKSFRGKAKDLPATDRRVQKIGGCFDPEQISVSLSLHYHSVWISWITGDFQIGDNIKPLDPGSVASIVNYGEFELPLTNTAEGYSLVYNQLYPFKGLKNYTSGIIHHVRLTGLNADTLYQYQCGDPFIGAMSDVFYFKMMPISGPRSYPNRIAIVGDLGLTYNTTSTVNHILINHPDLLLLVGDVTYANLYLTNGTGSDCYLCSFPKTPIHETYQPRWDYWGRFMQPLISKVPFMVVEGNHDIEEQIEERQFVSYSSRFAFPSVESGSFSTLYYSFNAGGIHFVMLGAYTSYHKSGDQYKWLERDLARVDRDVTPWLIATWHPPWYSTYTAHYREAECMRVSMEDLLYTYRVDIVFNGHVHAYERSHRVYNYKLDRCGPIYITVGDGGNREKMAILHADEPGNCPRPHSTSNKSVGGLCAFNFTSGPAKGKFCWDRQPIYSAYRESSFGHGILEVKNETHALWTWHRNKDSYKVAGDQIYIVREPEICAVESKRS 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19707798 19710506 - Bma019691.1 Bma04g01056 81425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01056 550 Pfam Iron/zinc purple acid phosphatase-like protein C 433 529 IPR025733 -
Bma04g01056 550 PANTHER ACID PHOSPHATASE RELATED 36 547 IPR039331 GO:0003993
Bma04g01056 550 SUPERFAMILY Metallo-dependent phosphatases 206 527 IPR029052 -
Bma04g01056 550 SUPERFAMILY Purple acid phosphatase, N-terminal domain 63 196 IPR008963 GO:0003993|GO:0046872
Bma04g01056 550 Pfam Purple acid Phosphatase, N-terminal domain 82 193 IPR015914 GO:0003993|GO:0046872
Bma04g01056 550 PANTHER PURPLE ACID PHOSPHATASE 15 36 547 - -
Bma04g01056 550 Gene3D - 474 547 IPR029052 -
Bma04g01056 550 Gene3D - 201 473 IPR029052 -
Bma04g01056 550 Pfam Calcineurin-like phosphoesterase 206 418 IPR004843 GO:0016787
Bma04g01056 550 Gene3D - 81 197 - -
Bma04g01056 550 CDD MPP_PAPs 203 538 IPR041792 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01056 K22390 ACP7; acid phosphatase type 7 - csv:101214711 890.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01056 Bma-Chr4:19707798 Bma09g00550 Bma-Chr9:42459523 0 dispersed
Bma04g01056 Bma-Chr4:19707798 Bma11g00846 Bma-Chr11:28353568 1.01E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g907 . . Bda03g01128 . . . Bma04g01056 . . Cmo17g00102 . . . . . . . . . . . . . . Cla06g00762 Cam06g0811 Cec06g0823 Cco06g0829 Clacu06g0813 Cmu06g0787 Cre06g1565 . . . . . . Chy05g00561 . . . . . . . . . Sed09g0186 . . . Cma17g00099 . Car17g00088 Cpe12g00088 . Bhi12g01497 Tan06g2299 Cmetu05g0011 . Hepe03g0361 . . . . . . . . . Lsi09g01138 . . Cme05g00719
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004148 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 2 2 7 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01056 Bma_Chr04 FPKM 3.534734 4.292781 16.414141 17.572023 10.27914 12.441444 8.701475 66.045761 73.509514 74.408356