Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01062 ATGACTGCAGATTTCTTATCAGAGCTTGGAATTATTGTTCATGTTGATCATCCAAACATTGCAAAAGTTATTGGTTATGGGATTGAAGGCGGAATGCATCTTGTTCTTCACTTGTCTCCTCACGGGAGCCTCGCTTCAATCATTTACGGAGATAGGAAGATCCTTGATTGGGGAATCAGATATAAGGTTGCTTTAGGCATTGCAGATGGTCTTCTTTATCTTCATGAAGGCTGTCAAAGAAGAATAATACATAGAGACATCAAGGCTTCCAATATATTGCTTTCTGAGGATTTTGAACCTCAGATATGTGATTTTGGGCTTGCAAAATGGCTGCCAGATCAATGGACTCACCACATTGTATCAAAGTTTGAAGGCACATTTGGATATCTTCCTCCAGAGTTCTTCATGCATGGAATGGTTGATGAAAAAACTGATGTATATGCTTTTGGCGTCCTGCTTTTAGAACTAATTACCGGACGTCAATCTTTGGACAGCTCGCAGCAGAGCCTCGTGATGTGGGCCAAACCTCATCTTGCCCATCTGGATATCAAGGAGCTTACTGATCCTTGCCTTGCTCATGCCTTCGATGTAGAGCAGATGAATCGCATGGTTGTGACGGCTTCGATGTGCATTCATCAATCTGCAGTCAATCGGCCCCAAATGAGTCAGCAGGTTGTTCAAATTTTAAAAGGAGAGAAAGGTGGTTTGGAGCTTCTTAAAAGTAGACAAAAATCGGAACTTAAACGAACATCCTCGGAAGAGCTACTTGACGCAGAAAAGTGTAATTCGACTAAGTACGTAAACGATCTTAGTCGTCACTTGGAGGTGGTTTTAGGCACTTCCAAATAG 849 42.05 MTADFLSELGIIVHVDHPNIAKVIGYGIEGGMHLVLHLSPHGSLASIIYGDRKILDWGIRYKVALGIADGLLYLHEGCQRRIIHRDIKASNILLSEDFEPQICDFGLAKWLPDQWTHHIVSKFEGTFGYLPPEFFMHGMVDEKTDVYAFGVLLLELITGRQSLDSSQQSLVMWAKPHLAHLDIKELTDPCLAHAFDVEQMNRMVVTASMCIHQSAVNRPQMSQQVVQILKGEKGGLELLKSRQKSELKRTSSEELLDAEKCNSTKYVNDLSRHLEVVLGTSK 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19924181 19925700 - Bma019700.1 Bma04g01062 81431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01062 282 ProSitePatterns Serine/Threonine protein kinases active-site signature. 82 94 IPR008271 GO:0004672|GO:0006468
Bma04g01062 282 SUPERFAMILY Protein kinase-like (PK-like) 3 223 IPR011009 -
Bma04g01062 282 SMART serkin_6 3 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g01062 282 Pfam Protein kinase domain 4 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g01062 282 PANTHER OS08G0249100 PROTEIN 1 273 - -
Bma04g01062 282 Gene3D Transferase(Phosphotransferase) domain 1 40 256 - -
Bma04g01062 282 ProSiteProfiles Protein kinase domain profile. 1 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01062 - - - mnt:21394551 463.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01062 Bma-Chr4:19924181 Bma14g01955 Bma-Chr14:42272646 1.86E-127 dispersed
Bma04g01062 Bma-Chr4:19924181 Bma13g00486 Bma-Chr13:9100283 2.25E-128 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g390 . Blo12g00063 . . Bpe04g01182 . Bma04g01062 . Cmo08g01162 . . . . . . . . . . . . . . . Cla06g00524 . . . . . . . Cone15ag0801 Cone7ag0189 . . . Chy11g01451 . . . . . . . . . . . . Cma08g01190 Cma17g00290 Car08g01067 Car17g00266 Cpe12g00242 Cpe17g00108 Bhi12g01765 . . . . . . . . . . . . . Lsi09g01380 . . Cme11g01956
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009081 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66465 PF00069 Pkinase 1.10E-31 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01062 Bma_Chr04 FPKM 0.289855 0.0 0.0 0.0 6.198118 4.016187 4.627086 0.0 0.0 0.0