Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01080 CACTTCAAGAACATGCCCGCTAACGCCATTGTTAAGCCTCGAGTTTTTCCTCAATTACTGTCTACATCATCCACTTTCAACTCTCCTGGACTTCCTCCCGCACTTCGTTCTAATTTGGAGGGGAGACGAGAGGCGTTGCCCAGAATGGCTGAAGCTTTCGAACCTAACCTTGGGAGAAGAAGTAGAGAGGAATTAGAGTACGAGAGCAGATCCGGCAGTGAAAACATTGACGACGGCTCCGGCGACGATCAAGAGGCTACCAACGGCAACCCACCCAGAAAGAAACGACACCATCGACACACTCCCCAGCAAATCCAAGAACTCGAATTAGTTTTCAAGGAGTGCCCTCATCCTGATGAGAAGCAAAGATTAGAGCTAGGCAGTAGGCTTGGTTTAGAAACCAGACAAGTCAAATTCTGGTTCCAAAATCGTCGAACCCAAATGAAAACTCAGTTGGAAAGGCACGAGCATGCATTGCTCCGGCAAGAGAATGACAAGCTTAGATCGGAGAACTTGTCGATTAGAGAAGCCATGAGGATCCCAATTTGCTCCAACTGTGGTGGCCCTGCAATGATTGGCGAAATTTCACTCGAAGAACAGCAACTTAGGATTCAAAATGCCCAACTGAAAGACGAGATACACCGTGCTTTCTTCCTCGCAGGAAGGTTTCTGGGTCGACCGATTTCGAAACTCGGTACCTCCGTTGCAACTCCACTTTCAGGCTCAAATTTAGAGGTTGGCGGGCTCACTCCGCCTGCGTCCGTGACTCTCGGGCCTTACTCCGTCGTCGGAAATTTGCATAGGCCGGTAGGGAGGTCGATATTTCTAGAGCTGGGTTTGGCGGCGATGGATGAACTGGTGAAAATGGCACAGACGGACGAGCCTCTCTGGACCAGAAATTCAGACACAGGAAGAGAAATTCTAAACCAGGCGGAGTATATCAGAATGTTTACTCCTTGTATTGGCTTTAAACCAAATGGTTTCGCGAGCGAGGCATCGAGACAGAGCAGCGTTGTGATCATCAACAGCGTAGCTCTCGCCGAAACTCTGATGGATTCGAATCGGTGGGCCGAGATGTTTCCTGGTTTGATTGCCACAGCTACCACAACCGACGTGATTTCGAGCGGAGTCGGAGGAACTAGACATTGCGCACTACAACTGATGGAGGCTGAGTTTGCAGTTCTGTCCCCGTTGGTTCCGGTTCGGTCAGTGAGCTTCCTCCGCTTCTGCAAACAGCATGGCGATGGGGTTTGGGCAGTTGTCGACGTCTCCATTGAGTCCATGAAAGAAGCTCATCCCAAATCCAGGAGGCTTCCTTCTGGCTGTGTTGTTCAAGATATGTCAAATGGGTTTTCTAAGGTTACTTGGGTGGAGCATGCAGAGTACGACGAAAGCCAAATTCACCACCTTTACCGCCCACTAGTAAGCACGGGCATGGGGTTTGGTTCTCCCCGATGGCTTGCCGCCCTCCAACGACAATGCCAATTTCTAGCCATCCTCTTGTCTCCCTCCCTTCACCCTCCTGGTCTCGCTGGTATTAACGCCTACTCATCCACTTCCATTGTTTCTTTTTTTTTAAGATCATTTTTTAGAAAATTAACCGCTGTGAATGCGAACCAGAGCAGTATGCTGATACTGCAGGAAACATGCACAGACGATGCCGGATCGCTTGTCGTGTACGCCCCACTCGACATTCCGGCCATGCACGTCGTGATGAACGGTGGAGATTCATCCTCCGTGACACTACCACCGTCAGGATTTGCGATTGTGCCAGATGGACGACGATCGGCTGGTCAAACAGAAGGAATCAACGGCAATGAAAGTGGGTCCCTCCTCACTGTAGCCTTCCAGATCCTTGTGAACAGCCTCCCTACGGGCAACCTCACCGTAGAGTCGGTCAACAATCTCATCTCCTCGACCATCCATAAGATCAAGGCCGCCATAGCCCAGTGA 1953 50.44 HFKNMPANAIVKPRVFPQLLSTSSTFNSPGLPPALRSNLEGRREALPRMAEAFEPNLGRRSREELEYESRSGSENIDDGSGDDQEATNGNPPRKKRHHRHTPQQIQELELVFKECPHPDEKQRLELGSRLGLETRQVKFWFQNRRTQMKTQLERHEHALLRQENDKLRSENLSIREAMRIPICSNCGGPAMIGEISLEEQQLRIQNAQLKDEIHRAFFLAGRFLGRPISKLGTSVATPLSGSNLEVGGLTPPASVTLGPYSVVGNLHRPVGRSIFLELGLAAMDELVKMAQTDEPLWTRNSDTGREILNQAEYIRMFTPCIGFKPNGFASEASRQSSVVIINSVALAETLMDSNRWAEMFPGLIATATTTDVISSGVGGTRHCALQLMEAEFAVLSPLVPVRSVSFLRFCKQHGDGVWAVVDVSIESMKEAHPKSRRLPSGCVVQDMSNGFSKVTWVEHAEYDESQIHHLYRPLVSTGMGFGSPRWLAALQRQCQFLAILLSPSLHPPGLAGINAYSSTSIVSFFLRSFFRKLTAVNANQSSMLILQETCTDDAGSLVVYAPLDIPAMHVVMNGGDSSSVTLPPSGFAIVPDGRRSAGQTEGINGNESGSLLTVAFQILVNSLPTGNLTVESVNNLISSTIHKIKAAIAQ 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23655765 23663834 + Bma019751.1 Bma04g01080 81449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01080 650 SUPERFAMILY Homeodomain-like 81 151 IPR009057 -
Bma04g01080 650 SUPERFAMILY Bet v1-like 269 495 - -
Bma04g01080 650 Pfam START domain 280 495 IPR002913 GO:0008289
Bma04g01080 650 CDD homeodomain 94 151 IPR001356 GO:0003677
Bma04g01080 650 SMART HOX_1 92 155 IPR001356 GO:0003677
Bma04g01080 650 MobiDBLite consensus disorder prediction 50 77 - -
Bma04g01080 650 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 258 513 - -
Bma04g01080 650 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 533 649 - -
Bma04g01080 650 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 37 248 - -
Bma04g01080 650 Gene3D - 80 167 - -
Bma04g01080 650 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 258 513 IPR042160 -
Bma04g01080 650 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 533 649 IPR042160 -
Bma04g01080 650 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 37 248 IPR042160 -
Bma04g01080 650 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677
Bma04g01080 650 ProSiteProfiles START domain profile. 268 499 IPR002913 GO:0008289
Bma04g01080 650 MobiDBLite consensus disorder prediction 50 103 - -
Bma04g01080 650 Coils Coil 192 212 - -
Bma04g01080 650 Pfam Homeodomain 94 149 IPR001356 GO:0003677
Bma04g01080 650 SMART START_1 277 496 IPR002913 GO:0008289
Bma04g01080 650 Coils Coil 145 165 - -
Bma04g01080 650 CDD START_ArGLABRA2_like 272 495 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g01044 Bma04g01080 CCT
Bma02g01044 Bma04g01080 ECH
Bma04g01080 Bma05g00972 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01080 Bma-Chr4:23655765 Bma06g01236 Bma-Chr6:49558018 5.02E-39 dispersed
Bma04g01080 Bma-Chr4:23655765 Bma05g00972 Bma-Chr5:48169367 1.14E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57224 PF01852 START 7.20E-48 CL0209 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01080 K09338 - csv:101222248 667.537