Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01089 ATGGCGTTATCAGGTCATGAAGTGAAGGATTCAGATATAATGGGAACAATGCCTTTTGATGACACAGTTTTTTGGGATGACGACAATGGCGACACTGTTCTATCATATGGAAATGCACACGAAGCCCAGATGGAAACACAAGCAATGGATCTAGTTGGTGACACTCAATTAATAGATTTTGATGGTGAAACTCAAGTAGTAGATTTTGATGGTGAAACTCAAGCTGTAGATTTTGACGAGGAAACCCAAGCTTTAGATTTTGAAGGTGAAATCCCACAGTTGGACGATATTGATTGCAACGAGAATATAGTAACACAGGTATTAAGTGATTATGACGATGCACTTTCTAATGACGGTGGTTGTGAAGAGTCAGAGTGCACCCAAACTTTGGGTGATAATGATTATATTTTGGATGATGAAGCATTACAAGGAATAGACCAATTAGTAGACCAGGAGAGGGTTCATTTTACTTCTCATTGTGAACTTGATGAGAAGGATGTTATGCAAGTACAAGATGCTTTGACGAATGAAAAGCGCCATTCAGGACCTCTGAGATTTACTTTAATTCGTGCTGCGTCGTTGCGTGTCTCTGGTTTGGCAGTGCGGAATATGAATAAGGAAAAGAAAGTCCATGCTGGGTCTTCTATTCTCACCCAAAATCATGCATTGGAATCACTTTCTGTTGCTACTGATGGGGCTCATTTTAAAGAGGACTCATCCAAACATGATATTGATGAGAAACATGATTGTGGGATTTGCCATGAGAATGGAAGCAGATTAATAAATGAGAATAAGCTCAAAGCTGGGAATTCAACAGCGAGAAAACTTTTTACAGAGAATACCTGTTCCAATGAATTGGGGACTCTTCATAATGAAAGGAATACAAGAAAAAAAAACTTGCTTGAGGTGCCTTCGTTTGAATGTCAGGTGTCAGGGTTAAGCTATGTTAACTCTCAAGAACCAGGGGAGTTTTCACAAACTAATGCTCTTGATTTTGTGGATAGGTTCATTCAAACTAGCATCAAGGAGTGTGATCTGGACATTAATCATGGTAAGGATACTCTGGAAAAAGCAAAATCAGTTTCTAAAATAAATGGACCGCAGAGTTTAGCCAAGAATGTTAAAGATAAAAGCACCTTTGAAAAATCAGAAGTTTTTGATTGGGATGATAGTCGTGAAGATGAAGGGGGTGGGGAGATTTTCTGCAGAAGAAAGGAAGAGTTCTTTGATAGAGGTGTTGTGTGGGTATCTTGCACCCTACCCCGGAAGCTAAGTGGAGGCATATCAAATGGGTACAGGAATAGAGGTCATTCGGATTCTAAATTAGAGTTGTGTGCTTTGAAACCCAGTAAAAAATATGCCCAACTATCCGAAGGAAAAACTAGGAAAAATCTAATTAAAGAGTTGGATGAAGAACTTAAGATTAAAGAATGTAAGGTAGGTTTGGTAAATAATATCACCGAGAAAGATGAAGAGCAATTTTCAAATGTAGGTTTTGATACTCAGGTTGCAGCTGAAGCTATGGAAGCACTGTGTCAGGGTGAGGAAATTGACTTTCCCATCGGTGATGCTCATCATTGTCTCCCAAATGCCTCGAAGGATTCACTAATGGGTTATGTTCGAAAAGCTAAAGTTAGTTTGAACTCAATGCACAATACACCTTGCAAAAGGATAAGCACGGCTGATGTAGAATTTGATTCTGTAGAGCCCAAGAAAAGAAAGATTAGTGGTAAACTACAAGAGGAGTTGGCTAAGTCAAGAAGAAGTAATAAAACTACGAACCAGAGCGTGCAAGAGGGAATACATAAGTTTGTGCCAATTGCTCGTCGAACTAGACGATCTTTGATTGTAAATCAAATGGAAGATGCTGAAAATGCATGGGGTGATGATGAGCCAATCACTCATGGTACTAGCAAAAATAGTATTGGGAAGAGTAAGAAGATATCTAAAGTGCATGCAAAAGTTCAGAAGTCAAAGTCAACGCCTAATCATTCAAAGGAATTAAAAAATGTAAAACTTAGTCCACAGAGGCAACTGAATCAAAAGTCAATGACCAAGAGTGATGGTAGTGATATTGACTTGATGAGCTCTTTACGGGGAAGATCTGATCGTAATTTTTCAGGGAAATTTATTAGTCCCGATAGCAATGCTGCTACACGACCGAGAACACGAAGGAGCTCTGCTATTACTCATTACGACCATAGCAAGTTGAATAAGACACCCCCAGTCAAATATGCTTTCCCAGTTTTTTCCTCTTTGGACAAAGAATTGCAAGGAAACCGACAGTTGGGCATCAAGGGTTCAGAAAATGCTATTTCTTGCCGTACTTCTGATACGAATGGGAAATTGATGGTCAAAGATTTTATAGAGCAGCACGAAGTCAGGTTATGTGACGGGAAGAGTGATATGGGTTCAATGTCTTCTGCACAAAATCCTAATTGCAAAGATTCGCCAGAAAAGAATTGTAACCCATCCAATGCATTGTCTGCTACTCCAGATAATTGTAAGATACCTGTGAATGCTGCATCACCTGTTTGTATGGGTGATGACTATTACAATAAATACTTTAAGAAAAACCCTTCAAAACCAAGAATGATTCAAGAAATTCGCAGCTTAAGTGCCACGGGTCACTTGCTTTCATCTAGACCAAACATTTCAAGGAAAAGGAGAGATACAACTGGTATTCGAGTTTTGTACAGCCAACACTTGAATGACGACATTGTAAACCAACAGAAGAAGATTTTGTCCAGACTAGGAATTTCGATGGCATTATCCATCACAGATGCCACACACTTCATTGCTGATAAATTTGTGCGCACAAGGAATATGTTAGGAGCTATTGCTCTAAGCAAATCCGTCGTTACTCATTCATGGATTGAGAATTGTGGACAAGCAAATTGCTTTATTGATGAAAAAAATCATATCTTAAGGGATACAAAAAAAGAAAAGGAATTTGGATTTTGCATGCCATTGTCACTGTCTCGTGCTGCTAAGCATCCACTTTTAAAGGGTCAAAGAGTCTTTATAACTGAAAATACGAAGCCTGGGAAAGAGATAATTTCGAGTTTGGTGAAGGCGGTGGAGGGCCAAGTTGTGGAGAGAATTGGTAGGACTGCTTTGAAAAATGATAAATTTCCTGAAGATTTACTGGTTTTGTCTTGTGAAAAAGATTATGAAATTTGCGTGCCATTTCTTGAAAAAGGGGCTACAATTTATAGTTCTGAGCTGTTATTGAATGGAATAGTTATTCAAAAGCTGGAATTTGAAAGACATCGTCTTTTTGCAGATCATGTTAAGAGGACGCGCTCGACAATGTGGTTAAAGAAAGATGGCAATAAGTTTCTTCCAGTGGCTAAATCTCAATAA 3366 38.77 MALSGHEVKDSDIMGTMPFDDTVFWDDDNGDTVLSYGNAHEAQMETQAMDLVGDTQLIDFDGETQVVDFDGETQAVDFDEETQALDFEGEIPQLDDIDCNENIVTQVLSDYDDALSNDGGCEESECTQTLGDNDYILDDEALQGIDQLVDQERVHFTSHCELDEKDVMQVQDALTNEKRHSGPLRFTLIRAASLRVSGLAVRNMNKEKKVHAGSSILTQNHALESLSVATDGAHFKEDSSKHDIDEKHDCGICHENGSRLINENKLKAGNSTARKLFTENTCSNELGTLHNERNTRKKNLLEVPSFECQVSGLSYVNSQEPGEFSQTNALDFVDRFIQTSIKECDLDINHGKDTLEKAKSVSKINGPQSLAKNVKDKSTFEKSEVFDWDDSREDEGGGEIFCRRKEEFFDRGVVWVSCTLPRKLSGGISNGYRNRGHSDSKLELCALKPSKKYAQLSEGKTRKNLIKELDEELKIKECKVGLVNNITEKDEEQFSNVGFDTQVAAEAMEALCQGEEIDFPIGDAHHCLPNASKDSLMGYVRKAKVSLNSMHNTPCKRISTADVEFDSVEPKKRKISGKLQEELAKSRRSNKTTNQSVQEGIHKFVPIARRTRRSLIVNQMEDAENAWGDDEPITHGTSKNSIGKSKKISKVHAKVQKSKSTPNHSKELKNVKLSPQRQLNQKSMTKSDGSDIDLMSSLRGRSDRNFSGKFISPDSNAATRPRTRRSSAITHYDHSKLNKTPPVKYAFPVFSSLDKELQGNRQLGIKGSENAISCRTSDTNGKLMVKDFIEQHEVRLCDGKSDMGSMSSAQNPNCKDSPEKNCNPSNALSATPDNCKIPVNAASPVCMGDDYYNKYFKKNPSKPRMIQEIRSLSATGHLLSSRPNISRKRRDTTGIRVLYSQHLNDDIVNQQKKILSRLGISMALSITDATHFIADKFVRTRNMLGAIALSKSVVTHSWIENCGQANCFIDEKNHILRDTKKEKEFGFCMPLSLSRAAKHPLLKGQRVFITENTKPGKEIISSLVKAVEGQVVERIGRTALKNDKFPEDLLVLSCEKDYEICVPFLEKGATIYSSELLLNGIVIQKLEFERHRLFADHVKRTRSTMWLKKDGNKFLPVAKSQ 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24490697 24499943 + Bma019769.1 Bma04g01089 81458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01089 1121 MobiDBLite consensus disorder prediction 803 821 - -
Bma04g01089 1121 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 76 1102 - -
Bma04g01089 1121 CDD BRCT_PAXIP1_rpt6_like 1001 1087 - -
Bma04g01089 1121 ProSiteProfiles BRCT domain profile. 887 976 IPR001357 -
Bma04g01089 1121 MobiDBLite consensus disorder prediction 645 659 - -
Bma04g01089 1121 MobiDBLite consensus disorder prediction 667 692 - -
Bma04g01089 1121 Gene3D BRCT domain 884 997 IPR036420 -
Bma04g01089 1121 Gene3D BRCT domain 998 1101 IPR036420 -
Bma04g01089 1121 MobiDBLite consensus disorder prediction 700 725 - -
Bma04g01089 1121 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 887 975 IPR001357 -
Bma04g01089 1121 CDD BRCT_MDC1_rpt1 895 969 - -
Bma04g01089 1121 MobiDBLite consensus disorder prediction 571 588 - -
Bma04g01089 1121 MobiDBLite consensus disorder prediction 571 600 - -
Bma04g01089 1121 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 76 1102 - -
Bma04g01089 1121 SUPERFAMILY BRCT domain 886 990 IPR036420 -
Bma04g01089 1121 MobiDBLite consensus disorder prediction 626 728 - -
Bma04g01089 1121 MobiDBLite consensus disorder prediction 802 821 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01089 K20780 MDC1; mediator of DNA damage checkpoint protein 1 - jre:109005938 745.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00488 Bma-Chr4:4260473 Bma04g01089 Bma-Chr4:24490697 2.04E-08 dispersed
Bma04g01089 Bma-Chr4:24490697 Bma15g00552 Bma-Chr15:6383825 2.03E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g376 . Blo12g00044 Bda03g01216 . . . Bma04g01089 . Cmo08g01172 Cmo17g00291 . . . . . . . . . . . . . . . . . . . . . Cone14ag0793 Cone15ag0794 . . . . Chy11g01463 . . . . . . . . . . . . . . Car08g01075 Car17g00277 Cpe12g00254 Cpe17g00100 Bhi12g01748 . . . . . . . . . . . . . . . . Cme11g01969
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010432 1 1 1 1 1 1 2 0 1 1 0 1 0 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01089 Bma_Chr04 FPKM 51.564465 52.523396 62.351471 66.139954 82.885651 74.967018 83.499229 55.370872 63.283615 64.178612