Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01098 ATGTCTCTAAAGAGTATAATTCAGGACATGAGGTCTCGCTCGCATCGGGTGGTTCAAGATGTCTCACCCACCATTATGAAAGACGGTTTGGAGCAGAGCTGCTGGGCGTACATGCCCCAGGAGCTTCTGCGTGAGGTTCTTATGCGCATCGAGGTATCTGAGGGTGCTTGGCCGCCGAGGAAGAGCGTCGTCGCTTGCGCCGGTGTGTGCCGGAGTTGGAGAGTTATTACAAAGGAGATCGTCAAAACTCCTGAAATATCTGGAAAGTTGACGTTCCCGATCTCTGTCAAACAGCCTGGTTCGAGGGAGTCTCTTCTTAGATGCTTCATAAAGCGAAACCGATCCACACAAACTTATTGCCTTTTTCTCAGTTTAACTAATGCCCTCACTGATGATGGGAAGTTTCTTCTTGCTGCACGAAAATGTAGACGACCCACCTGTACAGATTATATCATATCCATTCATGCTGATGACATGTCCAAGGGGAGCACCACCTACGTTGGGAAATTAAGATCCAACTTTCTAGGAACCAAATTTACAATTTTTGACGGGCAGCCACCTCATGCGGGTGCGAAGATGACAAAAAGTCGCTCCACCAGGCTTGTAAATCTGAAACAAGTTTCACCCAAGGTTCCTGTAGGGAACTACCCAGTTGCTCACATCTCATATGAATTGAATGTACTGGGTTCAAGGGGTCCAAGGAGAATGCAGTGCATCATGGACGCCATTCCTGCCTCTTCAATTGAACCTGGGGGAAAGGCTCCCACACAAACTGAGCTTTCACTTAACAATGTTGAATTTTTCCCATCACTCCCATATTTCCGGTCAAAGTCAATTCACATGGATAACTATCTATCAGGACCTCTGACCAGTCAGAAAGATGAAATGCTGGTTTTGAGAAACAAGAACCCCAGGTGGCATGAGCAGTTACAATGCTGGTGCTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTGAAAAATTTTCAGTTAGTTGCTTCGCCAGAAAATGGACCAGCTGGACCAGAACATGAGAAAATCATCCTCCAATTTGGTAAAGTAGGGAAGGATTTATTTACAATGGATTATCGGTACCCAATCTCAGCATTCCAGGCTTTTGCAATCTGTCTTAGCAGCTTTGATACCAAGATCGCATGTGAATGA 1164 45.88 MSLKSIIQDMRSRSHRVVQDVSPTIMKDGLEQSCWAYMPQELLREVLMRIEVSEGAWPPRKSVVACAGVCRSWRVITKEIVKTPEISGKLTFPISVKQPGSRESLLRCFIKRNRSTQTYCLFLSLTNALTDDGKFLLAARKCRRPTCTDYIISIHADDMSKGSTTYVGKLRSNFLGTKFTIFDGQPPHAGAKMTKSRSTRLVNLKQVSPKVPVGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASSIEPGGKAPTQTELSLNNVEFFPSLPYFRSKSIHMDNYLSGPLTSQKDEMLVLRNKNPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24956520 24959033 - Bma019780.1 Bma04g01098 81467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01098 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Bma04g01098 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Bma04g01098 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Bma04g01098 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Bma04g01098 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Bma04g01098 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Bma04g01098 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Bma04g01098 387 Pfam Tub family 96 382 IPR000007 -
Bma04g01098 387 PANTHER TUBBY-RELATED 1 387 - -
Bma04g01098 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Bma04g01098 387 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515
Bma04g01098 387 Pfam F-box domain 38 82 IPR001810 GO:0005515
Bma04g01098 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Bma04g01098 387 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 387 - -
Bma04g01098 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Bma04g01098 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02327 Bma-Chr1:80765164 Bma04g01098 Bma-Chr4:24956520 1.21E-88 dispersed
Bma04g01098 Bma-Chr4:24956520 Bma12g00381 Bma-Chr12:7436285 1.38E-153 dispersed
Bma13g00928 Bma-Chr13:39771682 Bma04g01098 Bma-Chr4:24956520 1.87E-125 transposed
Bma15g00428 Bma-Chr15:4645045 Bma04g01098 Bma-Chr4:24956520 1.86E-15 transposed
Bma04g01098 Bma-Chr4:24956520 Bma05g01061 Bma-Chr5:49311291 6.72E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57225 PF01167 Tub 4.20E-110 CL0395 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01098 K19600 - zju:107426905 669.463