Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g01098 | ATGTCTCTAAAGAGTATAATTCAGGACATGAGGTCTCGCTCGCATCGGGTGGTTCAAGATGTCTCACCCACCATTATGAAAGACGGTTTGGAGCAGAGCTGCTGGGCGTACATGCCCCAGGAGCTTCTGCGTGAGGTTCTTATGCGCATCGAGGTATCTGAGGGTGCTTGGCCGCCGAGGAAGAGCGTCGTCGCTTGCGCCGGTGTGTGCCGGAGTTGGAGAGTTATTACAAAGGAGATCGTCAAAACTCCTGAAATATCTGGAAAGTTGACGTTCCCGATCTCTGTCAAACAGCCTGGTTCGAGGGAGTCTCTTCTTAGATGCTTCATAAAGCGAAACCGATCCACACAAACTTATTGCCTTTTTCTCAGTTTAACTAATGCCCTCACTGATGATGGGAAGTTTCTTCTTGCTGCACGAAAATGTAGACGACCCACCTGTACAGATTATATCATATCCATTCATGCTGATGACATGTCCAAGGGGAGCACCACCTACGTTGGGAAATTAAGATCCAACTTTCTAGGAACCAAATTTACAATTTTTGACGGGCAGCCACCTCATGCGGGTGCGAAGATGACAAAAAGTCGCTCCACCAGGCTTGTAAATCTGAAACAAGTTTCACCCAAGGTTCCTGTAGGGAACTACCCAGTTGCTCACATCTCATATGAATTGAATGTACTGGGTTCAAGGGGTCCAAGGAGAATGCAGTGCATCATGGACGCCATTCCTGCCTCTTCAATTGAACCTGGGGGAAAGGCTCCCACACAAACTGAGCTTTCACTTAACAATGTTGAATTTTTCCCATCACTCCCATATTTCCGGTCAAAGTCAATTCACATGGATAACTATCTATCAGGACCTCTGACCAGTCAGAAAGATGAAATGCTGGTTTTGAGAAACAAGAACCCCAGGTGGCATGAGCAGTTACAATGCTGGTGCTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTGAAAAATTTTCAGTTAGTTGCTTCGCCAGAAAATGGACCAGCTGGACCAGAACATGAGAAAATCATCCTCCAATTTGGTAAAGTAGGGAAGGATTTATTTACAATGGATTATCGGTACCCAATCTCAGCATTCCAGGCTTTTGCAATCTGTCTTAGCAGCTTTGATACCAAGATCGCATGTGAATGA | 1164 | 45.88 | MSLKSIIQDMRSRSHRVVQDVSPTIMKDGLEQSCWAYMPQELLREVLMRIEVSEGAWPPRKSVVACAGVCRSWRVITKEIVKTPEISGKLTFPISVKQPGSRESLLRCFIKRNRSTQTYCLFLSLTNALTDDGKFLLAARKCRRPTCTDYIISIHADDMSKGSTTYVGKLRSNFLGTKFTIFDGQPPHAGAKMTKSRSTRLVNLKQVSPKVPVGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASSIEPGGKAPTQTELSLNNVEFFPSLPYFRSKSIHMDNYLSGPLTSQKDEMLVLRNKNPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 24956520 | 24959033 | - | Bma019780.1 | Bma04g01098 | 81467 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g01098 | 387 | PRINTS | Tubby superfamily signature | 215 | 242 | IPR000007 | - | |
Bma04g01098 | 387 | PRINTS | Tubby superfamily signature | 317 | 333 | IPR000007 | - | |
Bma04g01098 | 387 | PRINTS | Tubby superfamily signature | 365 | 387 | IPR000007 | - | |
Bma04g01098 | 387 | PRINTS | Tubby superfamily signature | 166 | 190 | IPR000007 | - | |
Bma04g01098 | 387 | PRINTS | Tubby superfamily signature | 344 | 363 | IPR000007 | - | |
Bma04g01098 | 387 | PRINTS | Tubby superfamily signature | 299 | 316 | IPR000007 | - | |
Bma04g01098 | 387 | PRINTS | Tubby superfamily signature | 150 | 166 | IPR000007 | - | |
Bma04g01098 | 387 | Pfam | Tub family | 96 | 382 | IPR000007 | - | |
Bma04g01098 | 387 | PANTHER | TUBBY-RELATED | 1 | 387 | - | - | |
Bma04g01098 | 387 | SUPERFAMILY | Tubby C-terminal domain-like | 84 | 387 | IPR025659 | - | |
Bma04g01098 | 387 | SUPERFAMILY | F-box domain | 28 | 78 | IPR036047 | GO:0005515 | |
Bma04g01098 | 387 | Pfam | F-box domain | 38 | 82 | IPR001810 | GO:0005515 | |
Bma04g01098 | 387 | Gene3D | Tubby Protein; Chain A | 92 | 387 | IPR025659 | - | |
Bma04g01098 | 387 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 9 | 1 | 387 | - | - | |
Bma04g01098 | 387 | ProSitePatterns | Tub family signature 2. | 372 | 387 | IPR018066 | - | |
Bma04g01098 | 387 | ProSitePatterns | Tub family signature 1. | 317 | 330 | IPR018066 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g02327 | Bma-Chr1:80765164 | Bma04g01098 | Bma-Chr4:24956520 | 1.21E-88 | dispersed | |
Bma04g01098 | Bma-Chr4:24956520 | Bma12g00381 | Bma-Chr12:7436285 | 1.38E-153 | dispersed | |
Bma13g00928 | Bma-Chr13:39771682 | Bma04g01098 | Bma-Chr4:24956520 | 1.87E-125 | transposed | |
Bma15g00428 | Bma-Chr15:4645045 | Bma04g01098 | Bma-Chr4:24956520 | 1.86E-15 | transposed | |
Bma04g01098 | Bma-Chr4:24956520 | Bma05g01061 | Bma-Chr5:49311291 | 6.72E-145 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57225 | PF01167 | Tub | 4.20E-110 | CL0395 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g01098 | K19600 | - | zju:107426905 | 669.463 |