Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01114 ATGGGTAGGTGTTTTCCTTGTTTTGGATCAGAAAACAAGGATGAAAGCGATGTGAAACAAGTGAACAAGCAATTCTCAGCGAAGGATGGCTCAGCTCCTCATTCTCTCCATTTGAACAAACTAAGCTCCGACAAATCAAAATCTCGAAATAGTATCGACAACAAGAAAGAGCAGTCCTCTCTAAAAGAAGGATCGACGGCACAAATTGCAGCACAGACATTTACATTTCGAGAGCTTGCTGCTGCCACTAAGAATTTCAGATCTGAATCCTTATTGGGTGAAGGAGGATTTGGACGTGTGTATAAGGGTCGCCTAGAGAGCACTGGACAGGTAGTTGCTGTGAAACAGCTAGATCGAAATGGACTTCAAGGGAATCGGGAATTCTTGGTAGAGGTTCTAATGCTTAGCCTGTTACACCACACAAATCTTGTCAATTTGATTGGTTACTGTGCCGATGGAGATCAACGACTTCTCGTCTATGAGTTCATGCCACTGGGATCCTTGGAGGATCATCTCCATGATTTTCTCCCAGACAGGAAACCTCTGGATTGGAACACTAGAATGAAGATAGCGGCTGGTGCAGCAAAGGGGCTGGAATATTTGCATGACAAGGCAAACCCTCCTGTTATATACAGAGACCTAAAATCTTCAAATATTCTCCTCGATGAATGTTATCATCCCAAGTTGTCAGATTTTGGTCTTGCAAAATTGGGACCCGTAGGCGATAAAACCCATGTATCAACACGGGTGATGGGAACGTATGGCTATTGTGCTCCAGAATATGCTATGACTGGCCAACTTACTCTAAAATCCGATGTCTACAGTTTTGGAGTCGTCTTTCTGGAAATTATTACTGGCCGGAAAGCGATTGATAATACTCGATGTCCAGGAGAGTATAACCTTGTTGCATGGGCCCGGCCACTATTTAAGGATCGGCGAAAATTCTCAAAAATGGCTGACCCACTTTTGCAAGGGCGGTACCCGATACGAGGACTTTATCAAGCCCTTGCAGTGGCAGCCATGTGTTTGCAGGAGCAAGCTGCCACAAGGCCTCTGATAGGAGATGTTGTCACTGCTCTTACTTACTTAGCATCCCAAACCTATGACCCAAGTGTAGCTCCTCAAAGTAACAAAGTTCGAAAAGGCGAGAGCGATGGGGTTGACAGCCCGGAGCATCGAGGTTCCCCTTCTATTTATAGAAACTCTCCTGATTTTAGAAAGAGAGACGTTAGAGAATCGAGTAACGGCAGCAGTGGCTCGAGCAGAAAATGGGGGTGGGAAGAGTTAGAGCGACAAGAATCTCATCGTGGAAGCCCTGTAAATGGTGGGAAAGGAAGAGAAACTCCACGGAATCGGGATCTCGATCGAGAACGAGCTGTGGCCGAGGCCAAAGTATGGGGCGAGAATTGGAGAGAGAAAAAACGTGGAAATGCGATTGGTAGTTTTGATAATGCACATGAACAACAAAATGCTACTCCATAA 1482 45.41 MGRCFPCFGSENKDESDVKQVNKQFSAKDGSAPHSLHLNKLSSDKSKSRNSIDNKKEQSSLKEGSTAQIAAQTFTFRELAAATKNFRSESLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHTNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDFLPDRKPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDECYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLEIITGRKAIDNTRCPGEYNLVAWARPLFKDRRKFSKMADPLLQGRYPIRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPSVAPQSNKVRKGESDGVDSPEHRGSPSIYRNSPDFRKRDVRESSNGSSGSSRKWGWEELERQESHRGSPVNGGKGRETPRNRDLDRERAVAEAKVWGENWREKKRGNAIGSFDNAHEQQNATP 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26259746 26265539 - Bma019816.1 Bma04g01114 81483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01114 493 MobiDBLite consensus disorder prediction 370 493 - -
Bma04g01114 493 CDD STKc_IRAK 92 361 - -
Bma04g01114 493 MobiDBLite consensus disorder prediction 446 480 - -
Bma04g01114 493 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g01114 493 Pfam Protein kinase domain 87 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g01114 493 Coils Coil 38 58 - -
Bma04g01114 493 Gene3D Phosphorylase Kinase; domain 1 45 162 - -
Bma04g01114 493 Gene3D Transferase(Phosphotransferase) domain 1 163 381 - -
Bma04g01114 493 PANTHER OS07G0668900 PROTEIN 1 481 - -
Bma04g01114 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Bma04g01114 493 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g01114 493 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 1 481 - -
Bma04g01114 493 SUPERFAMILY Protein kinase-like (PK-like) 72 374 IPR011009 -
Bma04g01114 493 MobiDBLite consensus disorder prediction 1 64 - -
Bma04g01114 493 MobiDBLite consensus disorder prediction 40 60 - -
Bma04g01114 493 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01906 Bma-Chr1:70289296 Bma04g01114 Bma-Chr4:26259746 5.26E-144 dispersed
Bma02g00880 Bma-Chr2:47096760 Bma04g01114 Bma-Chr4:26259746 0 dispersed
Bma04g00288 Bma-Chr4:2323193 Bma04g01114 Bma-Chr4:26259746 7.98E-165 dispersed
Bma04g01114 Bma-Chr4:26259746 Bma11g00145 Bma-Chr11:1296638 1.14E-171 dispersed
Bma04g01114 Bma-Chr4:26259746 Bma10g00543 Bma-Chr10:6598170 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66467 PF00069 Pkinase 5.10E-45 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01114 - - rcu:8262400 797.734