Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01118 TTGTGGAAGAGGAAGACAGTAGATTCTAGAGTTGGGTTTTTGCAGTTCGCAAAGCTGGACAACCACAGAGGAGACCGTCATGGACCTAACCAAGATTCTCACTCCTACCGTCACAGAGCCCCTCCTCGCTTCTATGATGGCCCCATGACTCACCATGAGAACCGCCGTAGCCCTGGTGATTTCAGAGTCGGAGGTAACGGTGGTTACCACCGTTTTTACGACAGTCCGCCCGGTCATTCTCCTGGAAGTGGCAGTGGATTCTGGCCAATGGGTGGGGGAGGTGGTGGATTCCGCCCGATTGGTGCCGATGCTAGAGGATATGGGTCTAATCACCAGCCATCGCCTATGGTAGGACATAAACGAGGGTATCCGTTCATGGGTCGGGGAGGATCTCCTGATAATTTTGATAATAGTAATTTTGCAAAGCTTTTTGTTGGATCCGTTCCGAGGACAGCCACAGAAGAAGATATTCGTCCATTGTTTGAAAATCATGGAAATGTCATAGAGGTAGCTTTGATTAAAGATAAGAGGACGGGGCAGCAACAAGGTATATGTGATTTCTGGCTTTTATAA 573 48.69 LWKRKTVDSRVGFLQFAKLDNHRGDRHGPNQDSHSYRHRAPPRFYDGPMTHHENRRSPGDFRVGGNGGYHRFYDSPPGHSPGSGSGFWPMGGGGGGFRPIGADARGYGSNHQPSPMVGHKRGYPFMGRGGSPDNFDNSNFAKLFVGSVPRTATEEDIRPLFENHGNVIEVALIKDKRTGQQQGICDFWLL 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26462746 26464306 + Bma019821.1 Bma04g01118 81487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01118 190 SUPERFAMILY RNA-binding domain, RBD 112 185 IPR035979 GO:0003676
Bma04g01118 190 Gene3D - 138 185 IPR012677 -
Bma04g01118 190 MobiDBLite consensus disorder prediction 21 94 - -
Bma04g01118 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 183 IPR000504 GO:0003723
Bma04g01118 190 MobiDBLite consensus disorder prediction 21 59 - -
Bma04g01118 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 185 IPR000504 GO:0003723
Bma04g01118 190 PANTHER FCA 22 186 - -
Bma04g01118 190 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 22 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01118 - - - cmax:111494860 219.164
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g01118 Bma05g01000 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01118 Bma-Chr4:26462746 Bma05g01000 Bma-Chr5:48491326 1.36E-56 dispersed
Bma04g01118 Bma-Chr4:26462746 Bma05g00999 Bma-Chr5:48480901 6.26E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021526 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01118 Bma_Chr04 FPKM 4.08718 5.490096 33.904613 32.341835 119.489555 136.318863 121.921577 7.626245 6.825695 6.330272