Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma04g01123 | ATGAATGAAGTTGTGACTCCTGAATCAATTCGAAATGCTTTTTGCCGAACAGAGGATGGCTTCACTACCTTTGTCTCAGAGCTATGGAGTACTCAGCCCCAATTAGCAACCGTTGGATCTTGTTGTTTAGTTGGAGTGATATGTCAGCAGACTCTCTTTGTGGCAAACCTTGGGGACTCCCGGGTTGTGTTGGGGAAAAAGGTTGGCGTTACAGGAGAGATTGCTGCCATCCAGTTGTCAGCCGAACATAATGCAAATCAGGAAGATGTTAGGCGGGAATTGAAAGAACTTCACCCAAATGATTCTCAAATTGTTGTTCTCAAGCATGGAGTTTGGAGAGTAAAAGGCATCATACAGATTTCAAGATCTATAGGCGATGTCTATATGAAACATTCCCAGTTCAATAACGAAAGGATTAGTGGAAAATTCAGAATCCCTGAACCAGTGAGCATGCCAATTTTAAGTTCTGTTCCAGAAATTACTACGCATCAGATTCATCCAAATGACTCTTTTCTTATATTTGCATCTGATGGACTGTGGGAACACTTGAGTAATGAAAAAGCTGTGGACATAGTTCATAGTCATCCACGTGCAGGAAGTGCAAAAAGGCTAGTGAAGGCTGCACTTCAAGAGGCCGCTAGAAAACGAGAAATGCGTTACTCAGATCTTCGAAAAATTGACAAAAAGGTTAGACGGCACTTCCATGATGATATAACCGTTATTGTTTTATTCTTAAACCACGACCGAATATCCAGAGGCGTTACCCTTGACCACCCATTGTCGATTCGAAATGCACTGGATTCATAG | 807 | 42.01 | MNEVVTPESIRNAFCRTEDGFTTFVSELWSTQPQLATVGSCCLVGVICQQTLFVANLGDSRVVLGKKVGVTGEIAAIQLSAEHNANQEDVRRELKELHPNDSQIVVLKHGVWRVKGIIQISRSIGDVYMKHSQFNNERISGKFRIPEPVSMPILSSVPEITTHQIHPNDSFLIFASDGLWEHLSNEKAVDIVHSHPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDITVIVLFLNHDRISRGVTLDHPLSIRNALDS | 268 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 27103114 | 27104908 | - | Bma019828.1 | Bma04g01123 | 81492 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma04g01123 | 268 | Pfam | Protein phosphatase 2C | 32 | 215 | IPR001932 | - | |
| Bma04g01123 | 268 | CDD | PP2Cc | 7 | 245 | IPR001932 | - | |
| Bma04g01123 | 268 | SMART | PP2C_4 | 1 | 243 | IPR001932 | - | |
| Bma04g01123 | 268 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 245 | IPR001932 | - | |
| Bma04g01123 | 268 | PANTHER | ALPHABET, ISOFORM E-RELATED | 3 | 267 | - | - | |
| Bma04g01123 | 268 | SUPERFAMILY | PP2C-like | 6 | 246 | IPR036457 | - | |
| Bma04g01123 | 268 | PANTHER | PROTEIN PHOSPHATASE 2C 42-RELATED | 3 | 267 | - | - | |
| Bma04g01123 | 268 | Gene3D | - | 2 | 252 | IPR036457 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bma04g01123 | Bma05g00995 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma04g01123 | Bma-Chr4:27103114 | Bma05g00995 | Bma-Chr5:48448068 | 7.67E-167 | dispersed | |
| Bma04g01123 | Bma-Chr4:27103114 | Bma03g00616 | Bma-Chr3:5088697 | 3.36E-115 | transposed | |
| Bma04g01123 | Bma-Chr4:27103114 | Bma12g00917 | Bma-Chr12:40612620 | 5.63E-115 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma04g01123 | K01102 | - | zju:107419003 | 438.728 |