Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01132 ATGGAAGAGCTTAGGGAGAAGAAATACGGGTTTTCGTTTTCTTCGCTTGCACTTTTGAGGAATTACGACACTGGATTCAGATTGAATATGGACAAACGAATCGAGACTAGCAGTGATACAGAGGATGCTGGATGGGAATTATCGACCGGAGAAATCATGAAGATTGCTGGTACAAAGTTCATTCAGTCATTTTCTCGAGCAGGGGATGTGCACTCCATGATCGATCATCCCTATGATGTTTCCTTCTCTTCTCTCTCAGCTGAAGAGATCAAAGATGTAGAACTTGCTGAAATCCTCCTCGCTTGTGCCGAGAAAGTTGGAGCTCAACAATATGAACGAGCAAGCAATTTACTCAAACAGTGTAATTACTTGTCTTCGAATCTCGGGAGTCCTGTCCAACGAGTTGTTTATTACTTTTCCGAAGCTCTAAGGGAAAGGATTGATCGAGAAACCGGAAGAATCACGAATGAAAGCTTGGGAAATCATCGATCATTCAACATAGATGAAGCTTTGATGAGTCCGAATTCCACAGTACTTGCGTATCGAGAAAAAATTCCTTTCGCACAGACTGGACAATTTGCTGGAATCCAGGCAATACTAGAGAAAATTGGGAGCGCAACGAAGATTCACGTGATTGATCTTGCAATCAGAAATGGAATTCAATGGACCGTTCTAATGCAGGCTCTTTCTTCTCGTTCCGATTCTCCTGTCGAACTTCTGAAGGTGACAGCAATCGGGACTAATCTCGAGCATTTGATTGAAGATACTGGGAGGAGGTTGGAGAGTTTTGCTCAGACTATGAATTTACCTTTCTGCTTCAAAACAATCATGGTTTCAGACATACTAGATCTTAGAAAAGATCAATTTGACCTAGATTCTGAAGAAACAGTAGCCATCTACGCAGAATACGTCCTGAGAAGCATGATACGACAACCTGATCGATTGGAATCTCTGATGAGAGTGATCAGAAGCATCAAACCCTCTCTAATGGTGATTGCAGAAGTAGAGGGGAACCATAACTCGCCATTTTTCGTGAAGCGATTTGTGGAAGCTCTTTTCTTCTTCAGTGCACACTTTGATTGCCTTGAAACCTTCACGAAACGCGACGATCCAAACAGAAAAATAGCGGAATCATTATTCTTCGGCGAGGAAATCAGGAACATGGTAGCAAAGGAGGCAGATGAACGGACGAACCGAAACGTGAGCATGGATGTTTGGAGGGCATTTTTCAGTGGGTTTGGAATGGCGGAGATGGAATTGAGCTCCTCCTCCCTGTACCAGGCAAGGCTAGTGGTTCAGAGATTTGGCTGCAGCAGCTCTTGCACGCTGAGAATGAACGGACAAAGCTTGATCATTGGGTGGAAGGGTACGCCAGTGCATTCACTTTCAGCCTGGAAGTTTGTCTGA 1407 43.92 MEELREKKYGFSFSSLALLRNYDTGFRLNMDKRIETSSDTEDAGWELSTGEIMKIAGTKFIQSFSRAGDVHSMIDHPYDVSFSSLSAEEIKDVELAEILLACAEKVGAQQYERASNLLKQCNYLSSNLGSPVQRVVYYFSEALRERIDRETGRITNESLGNHRSFNIDEALMSPNSTVLAYREKIPFAQTGQFAGIQAILEKIGSATKIHVIDLAIRNGIQWTVLMQALSSRSDSPVELLKVTAIGTNLEHLIEDTGRRLESFAQTMNLPFCFKTIMVSDILDLRKDQFDLDSEETVAIYAEYVLRSMIRQPDRLESLMRVIRSIKPSLMVIAEVEGNHNSPFFVKRFVEALFFFSAHFDCLETFTKRDDPNRKIAESLFFGEEIRNMVAKEADERTNRNVSMDVWRAFFSGFGMAEMELSSSSLYQARLVVQRFGCSSSCTLRMNGQSLIIGWKGTPVHSLSAWKFV 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28127681 28129087 + Bma019847.1 Bma04g01132 81501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01132 468 Pfam GRAS domain family 96 466 IPR005202 -
Bma04g01132 468 ProSiteProfiles GRAS family profile. 86 466 IPR005202 -
Bma04g01132 468 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 5 466 - -
Bma04g01132 468 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 466 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01132 - - - pvy:116122852 580.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01132 Bma-Chr4:28127681 Bma09g00797 Bma-Chr9:46460303 2.81E-154 dispersed
Bma04g01132 Bma-Chr4:28127681 Bma02g00512 Bma-Chr2:10189118 1.92E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g81 . Blo12g00085 Bda03g01173 . Bpe04g01111 . Bma04g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018085 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57226 PF03514 GRAS 7.20E-90 CL0063 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01132 Bma_Chr04 FPKM 61.288399 63.114147 30.40053 32.662682 25.374792 27.793245 27.557371 22.63089 23.549631 23.425186