Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01136 ATGGAGGAAGCAAACATGAGATGGTTACGACCAAATGAAATTCATGCTATACTCTGTAATCACAAATACTTCAGCATCAAGGTCAAGCCAGTGCACTTGCCCCCAGGTACAATTTTAAGATTGTTGTTATATTGTTATTCCCTTTATTTATTTTCATTTTCCTCGTTCCCCATTTTATTAACCTTCATTTTATTATTTGATCGCAAGATGCTTAGGAACTTCAGGAAAGATGGTCATAACTGGAAAAAGAAAAAGGATGGGAAGACCATTAAGGAAGCACATGAACACCTGAAGGTTGGTAATGAAGAAAGGATCCATGTATACTATGCACATGGACAGGATACTCCAACCTTCGTCCGCAGGTGTTATTGGCTACTTGATAAGAGTCTGGAACACATAGTTCTTGTTCATTATCGTGAAACTCAAGAGTTGCAGGGTTCTCCAGCAACCCCAGTGAATTCTAATTCTAGTTCTGTCTCTGACCATTCTGCCTCCCGGCGTTTTTCGGAAGAACTAGATTCTGGGACTAACCAAGCTCTATATGTTGGTGAAAATGAACTTCTAGAGTGTAGTAATAAGTTAACTGCGAAGCATTATGAGCAAAGACTTCATGAAATTAACACGCTCGAATGGGATGAGCTTCTTGTAACAGATAATCTTTCCAACACACCTAAAGGAGGAGACAAAGTCTTAGGTTTTCACCAACAGAATCAAGTTGCGGCAAATGATTCCACTGTTGGAGGAGGCGACACGATGTTGGAGGAAATTTCTACATTTGACAATGTCAGTGGATCAATTGGGAGAAATAACGCAAATCATTTTGGTTTGCCAAACAGCTCCTACATATCTACTATGGTTAGTCAATTAAATTCAAATGCGCAGAAAGGAAATACCATTGCAATGGCCTCCAATGTACCCTTAGATATTATGGCGAACGAGGGGTTGCAAAGTCAGGATAGCTTTGGGCGGTGGATAAATGATATTATCTCTGACTCTCCTGGTTCTGTAGATGATCCAGTTTTTGAGTCCTCCATTTTACCTCATTATGATGAATTTACCTCTGCTACGATAAATCATCATCCATCTTCTGTGCCAGAGCAAATGTTTACCATAACTGATATCTCTCCTGGATGGGCTTTTACTGCAGAAAAAACCAAGATTTTAATAACTGGATTTTTTCATGAAGAGTTTGCTCATCTGGCTAAATCCAGTTTGTTGTGTCTCTGTGGCGATGTTTGTATTCCTACAGAAGTCGTTCAACTTGGAGTTTATCGTTTCTTGGTACCTCCACATCCACCTGGATGTGTAAATATCTATCTCAGTTTAGATGGTCATAAACCAATCAGCCAAGTTATGAATTTTGAGTATCGCAACCAATTATTGGATGGTTCAGAAGTTTCTTTAGACGAAAAGGAAAGGTGGGAGGAGTTTGAAGTTCAGATGCGGCTTCTTGGTTTGCTTTTCTCTACATCGAAGAGCCTGAACATTCTGTCTAGTAAAGTATCACAAAATGCCCTAAAGGTAGCGAGAAACTTTGCTCAAAAAACATCTAACATTTCTAATAGTTGGGCTTATTTGCACAAGTCAATTCAAGATAACAAAATTTCGTTTCCTCTGGCAAAAGATGGCCTATTGGAACTTATTTTAAGGAACAGAGTAAGGGAATGGCTGTTAGAAAGGATTATTGAAGGGTCCAAGAAGAGCACTGAATTTGATGCTTACGGTCAAGGAGTAATACACTTGTGTGCCATCCTGGGATATTCATGGGCTGTACAATTATTTGCATGGTCAGGTTTAACATTGGATTTTCGGGACAAATCTGGATGGACAGCTCTTCACTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAGTTCTTCTATATGCCGGAGCAAAGCCAAACTTGGTCACAGACCCAACCTCAGAAAATCCTGGGGGATGCACAGCTGCTGATCTTGCATATGTAAAGGGTCATGATGGCTTGGCTGCCTATCTTTCTGAAAAGGCTTTAGTAGCTCATTTTCAGGAAATGAGTATAGCTGGAAATATAAGGGGTACACTGCAAATCAACACAACTGAGGGGGAGAGTGTAAACCCTGAGAATCTCAGTGAGGAGCAGCTATATATGAAAGATACTTTGGCAGCCTACAGAACAGCTGCCGATGCAGCAGCACGTATAAATGCTGCATTTCGCGAGCATTCTTATAAGCAAAGAACTAAAGAAGTTCAGGTTTCTACTCCAGAGATGGAAGCGCGCAATATTATTGCAGCTATGAAAATTCAGCATGCATTCCGCAATTATGAAATGCGACGAAAAATGGCAGCTGCTGCTCATATACAACATAGATTCCGTACTTGGAAAATGCGTAAAGATTTCCTTAACATGCGACGTCAAGCTATAAGAATTCAAGCTGCATTTCGAGGCTTCCAAGTACGGAGGCATTACCGTAAAATTATTTGGTCTGTTGGAGTGCTTGAGAAAGCTATACTACGGTGGCGCTTAAAGAGAAAAGGCTTTCGTGGGCTTCAGATTGAACCTGTGGATCCAATTGTAGAGGAAAGACAGGAAAGTGATACCGAGGAAGACTTTTACCGTACAAGCCAGAAACAAGCAAGTGAGCGTGTTGAGAGATCTGTTGTACGAGTTCAGGCCTTGTTTCGTTCAAGGAAAGCACAAGAAGACTATCAGAAAATGAAGATGGCCCATCTGGAAGCAATGGTAAGTAACACACCCTGA 2739 40.85 MEEANMRWLRPNEIHAILCNHKYFSIKVKPVHLPPGTILRLLLYCYSLYLFSFSSFPILLTFILLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGQDTPTFVRRCYWLLDKSLEHIVLVHYRETQELQGSPATPVNSNSSSVSDHSASRRFSEELDSGTNQALYVGENELLECSNKLTAKHYEQRLHEINTLEWDELLVTDNLSNTPKGGDKVLGFHQQNQVAANDSTVGGGDTMLEEISTFDNVSGSIGRNNANHFGLPNSSYISTMVSQLNSNAQKGNTIAMASNVPLDIMANEGLQSQDSFGRWINDIISDSPGSVDDPVFESSILPHYDEFTSATINHHPSSVPEQMFTITDISPGWAFTAEKTKILITGFFHEEFAHLAKSSLLCLCGDVCIPTEVVQLGVYRFLVPPHPPGCVNIYLSLDGHKPISQVMNFEYRNQLLDGSEVSLDEKERWEEFEVQMRLLGLLFSTSKSLNILSSKVSQNALKVARNFAQKTSNISNSWAYLHKSIQDNKISFPLAKDGLLELILRNRVREWLLERIIEGSKKSTEFDAYGQGVIHLCAILGYSWAVQLFAWSGLTLDFRDKSGWTALHWAAYCGREKMVAVLLYAGAKPNLVTDPTSENPGGCTAADLAYVKGHDGLAAYLSEKALVAHFQEMSIAGNIRGTLQINTTEGESVNPENLSEEQLYMKDTLAAYRTAADAAARINAAFREHSYKQRTKEVQVSTPEMEARNIIAAMKIQHAFRNYEMRRKMAAAAHIQHRFRTWKMRKDFLNMRRQAIRIQAAFRGFQVRRHYRKIIWSVGVLEKAILRWRLKRKGFRGLQIEPVDPIVEERQESDTEEDFYRTSQKQASERVERSVVRVQALFRSRKAQEDYQKMKMAHLEAMVSNTP 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28303415 28320514 - Bma019851.1 Bma04g01136 81505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01136 912 ProSiteProfiles IQ motif profile. 773 799 IPR000048 GO:0005515
Bma04g01136 912 SUPERFAMILY Ankyrin repeat 566 669 IPR036770 -
Bma04g01136 912 SMART iq_5 772 794 IPR000048 GO:0005515
Bma04g01136 912 SMART iq_5 795 817 IPR000048 GO:0005515
Bma04g01136 912 SMART iq_5 875 897 IPR000048 GO:0005515
Bma04g01136 912 ProSiteProfiles IQ motif profile. 796 820 IPR000048 GO:0005515
Bma04g01136 912 ProSiteProfiles IQ motif profile. 757 783 IPR000048 GO:0005515
Bma04g01136 912 SUPERFAMILY E set domains 370 457 IPR014756 -
Bma04g01136 912 Pfam IQ calmodulin-binding motif 798 817 IPR000048 GO:0005515
Bma04g01136 912 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Bma04g01136 912 ProSiteProfiles IQ motif profile. 877 905 IPR000048 GO:0005515
Bma04g01136 912 SMART ANK_2a 646 675 IPR002110 GO:0005515
Bma04g01136 912 SMART ANK_2a 607 636 IPR002110 GO:0005515
Bma04g01136 912 Pfam CG-1 domain 63 140 IPR005559 GO:0003677
Bma04g01136 912 ProSiteProfiles CG-1 DNA-binding domain profile. 1 147 IPR005559 GO:0003677
Bma04g01136 912 Gene3D - 487 672 IPR036770 -
Bma04g01136 912 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 908 - -
Bma04g01136 912 Pfam Ankyrin repeats (3 copies) 556 636 IPR002110 GO:0005515
Bma04g01136 912 MobiDBLite consensus disorder prediction 145 163 - -
Bma04g01136 912 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 1 908 - -
Bma04g01136 912 Gene3D - 774 820 - -
Bma04g01136 912 SMART CG_1_2 1 142 IPR005559 GO:0003677
Bma04g01136 912 Gene3D Immunoglobulins 364 460 IPR013783 -
Bma04g01136 912 ProSiteProfiles Ankyrin repeat region circular profile. 607 635 - -
Bma04g01136 912 MobiDBLite consensus disorder prediction 145 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01136 K21596 CAMTA; calmodulin-binding transcription activator - zju:107433255 1160.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g01136 Bma05g01017 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00850 Bma-Chr4:10747548 Bma04g01136 Bma-Chr4:28303415 3.71E-25 dispersed
Bma04g01136 Bma-Chr4:28303415 Bma08g00419 Bma-Chr8:13769590 6.06E-30 dispersed
Bma04g01136 Bma-Chr4:28303415 Bma05g01017 Bma-Chr5:48659681 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00419 . 278 877 CAMTA Transcription Factor Family AT5G09410 58.0 3.4e-172 602.4
Bma04g01136 BCT 1 906 CAMTA Transcription Factor Family AT3G16940 51.9 3.3e-254 874.8
Bma05g01017 BCT 28 915 CAMTA Transcription Factor Family AT3G16940 52.0 8.4e-250 860.1
Bma05g01017 BCT 1 631 CAMTA Transcription Factor Family AT4G16150 54.1 1.7e-198 689.9
Bma04g01136 BCT 1 631 CAMTA Transcription Factor Family AT4G16150 52.6 2.4e-189 659.4
Bma08g00419 . 278 877 CAMTA Transcription Factor Family AT5G09410 58.0 3.4e-172 602.4
Bma05g01017 BCT 1 631 CAMTA Transcription Factor Family AT4G16150 54.1 1.7e-198 689.9
Bma04g01136 BCT 1 631 CAMTA Transcription Factor Family AT4G16150 52.6 2.4e-189 659.4
Bma04g01136 BCT 1 906 CAMTA Transcription Factor Family AT3G16940 51.9 3.3e-254 874.8
Bma05g01017 BCT 28 915 CAMTA Transcription Factor Family AT3G16940 52.0 8.4e-250 860.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57227 PF12796 Ank_2 6.20E-08 CL0465 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01136 Bma_Chr04 FPKM 17.407303 16.77136 28.031979 26.724951 22.903042 25.220255 24.941216 70.385712 69.527321 74.456177