Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01144 ATGAATCTGAATCAAGGCAAGGGATCTATGCCGACTGCTAGCTCTAGTACTGCTCTCAAATCCGGCGAATTTGTTTCCGACCAATTTCCGGCGGGTCTTCGAGTTCTGGTCGTCGATGACGATCCGACCTGCCTGAGGATCTTGGAGAAGATGCTTCAATTTTGTCTCTACGACGTTACTAAATGCAATCGAGCGGAGATTGCGTTGTCTAAGCTTCGAGATAACAAAAACGGCTTCGATGTTGTAATTAGTGATGTCCACATGCCAGATATGGATGGGTTTAAGCTCTTAGAACACATTGGCCTAGAAATGGACTTGCCCGTTATCATGATGTCAGCTGATGAAGGGAAAGATGTCGTCATGAAGGGAGTGACTCACGGTGCTTGTGATTATCTAATAAAACCCGTTCGAATTGAGGCTTTGAAGAACATATGGCAACATGTAGTGCGGAGGACGAAGAATGAGTGGAAAGATCTAGAACAATCTGGAAGTGTGGAAGACGGCGATAGGCTACAGAAAAATTGTGACGAAGTGGACTACTCATCCTCGGCAAAAGATGGAAATTGCAAAAACTCAAAGAGGAGGAAGGACGATGAAGAAAAAGCAGAGGAACGAGAAGATTCATCCACATTGAAGAAGCCACGTGTTGTTTGGACGGTCGAGCTTCATCAACAGTTTGTTGCCGCTGTTAATCAACTAGGCATTGAAAAGGCTGTTCCTAAGAAAATTTTGGAGTTGATGAATGTTCCAGGACTCACTCGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGTGTGTATTTGAGAAGGCTAAGTGGAGTTTCGCCACACCCGAGTAATTTGAACAATTCTTTCATGACCCCACAAGAAGCAATGTTCGGACCGATTTCAGCACTCAACGGGATTGATCTTCAGACACTTGCTGTTGCTGGAAAACTCACACCCCAAAGTCTTGCCTCACTTCAAGCTTCTGGGCTTGGTAGATCTTCGCCGAAATCCAGCGTAATTTCTGATCAGAGGAACATTTTTAGCTTTGAAAATCCAAAATTAAGATTTGGTGATGCCCAGCCTCAGCATGTCAACAGTAGTAAACCAATAAATTTACTCCATGGAATCCCCACCACTATGGAAGCAAAGCAGCTTGCAAATTTGAGCCAATCTGTACAATCTCAAGGAGGCATGAACATGCAAGGAAACATCCATGGAGGCCAAACCAACTCTTTATTAACGCAGATGGCACAACCTCAATCATCAATCAGGCAGTCGATCAGAATACCTGGTGGGGTTTTGACAAACAATCTACCTCCACCAGAAACTTCTATGTTCAATTTTCCAATGAACCAAACAGCCGACTTTCCAGGAAATAGTTTGCCTTTTCAAACAGCTCCAGCTATTGTTAGTCCTCCATCTAAAGGGCCATTCCTTGAAGAATCAAATCTAGAAATAAAACAATCGGGAAGATTTGTGTCAAATTATGATGTATTTGATGACTTGCACGAACAGAAATCTCGGGATTGGAACTTGCAGCATCCCGGCTTGAACTTCAATCCCTCTCATGGGGACCTGGATATCTCTTCCTCAGGTTTATATAATCAAAACTTTGCCAATTGCCCAAGGATTATACAGGAAATCAATGTTTCTGCGACTCGGCATGAGAATGGACAGACTGGCGGACAGCAACTGAATTCTGTACTTTTTGACAATTCAGTTAAGGTCGAAGCTGAGACAATTCCAGATCCGAGTTGTGTCTTATTTCCGGAAAACTTCGACAGTGATGATCTAATGAGTACCCTTTTGAGACAACAACAAGAAAATTTCAGACCCGGCTCCACCGAAAGCGAATACGACTTCGACAGAGCTGCTATGCGCACATCATGGACACGAGACAATCCAGGACGAAGGTTTCTTGCATGTCAAAAATATGAGCGAGGCACAAGAGGATGTGATTTTTTCACATGGTATGATCCACCAACGAAGGAGAGAGAGAAGAAGGTACTGAATCTATTACAGTCGCGACTTACGGAAACAGAAGCAAAGAACGTGAAGTTGCGAACGAAGCTATTATTTTTTAAGTCTTTGTGGATTGTCATGACCATTGTAGTTGCTCTTTTTGTATGCTACAAAATGTAA 2130 43.05 MNLNQGKGSMPTASSSTALKSGEFVSDQFPAGLRVLVVDDDPTCLRILEKMLQFCLYDVTKCNRAEIALSKLRDNKNGFDVVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADEGKDVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRRTKNEWKDLEQSGSVEDGDRLQKNCDEVDYSSSAKDGNCKNSKRRKDDEEKAEEREDSSTLKKPRVVWTVELHQQFVAAVNQLGIEKAVPKKILELMNVPGLTRENVASHLQKYRVYLRRLSGVSPHPSNLNNSFMTPQEAMFGPISALNGIDLQTLAVAGKLTPQSLASLQASGLGRSSPKSSVISDQRNIFSFENPKLRFGDAQPQHVNSSKPINLLHGIPTTMEAKQLANLSQSVQSQGGMNMQGNIHGGQTNSLLTQMAQPQSSIRQSIRIPGGVLTNNLPPPETSMFNFPMNQTADFPGNSLPFQTAPAIVSPPSKGPFLEESNLEIKQSGRFVSNYDVFDDLHEQKSRDWNLQHPGLNFNPSHGDLDISSSGLYNQNFANCPRIIQEINVSATRHENGQTGGQQLNSVLFDNSVKVEAETIPDPSCVLFPENFDSDDLMSTLLRQQQENFRPGSTESEYDFDRAAMRTSWTRDNPGRRFLACQKYERGTRGCDFFTWYDPPTKEREKKVLNLLQSRLTETEAKNVKLRTKLLFFKSLWIVMTIVVALFVCYKM 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28858431 28869722 - Bma019870.1 Bma04g01144 81513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01144 709 CDD REC_typeB_ARR-like 35 149 - -
Bma04g01144 709 Gene3D - 210 272 - -
Bma04g01144 709 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Bma04g01144 709 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Bma04g01144 709 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Bma04g01144 709 PANTHER TWO-COMPONENT RESPONSE REGULATOR 439 589 - -
Bma04g01144 709 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 417 IPR045279 GO:0009736
Bma04g01144 709 Coils Coil 659 686 - -
Bma04g01144 709 SMART REC_2 33 145 IPR001789 GO:0000160
Bma04g01144 709 PANTHER TWO-COMPONENT RESPONSE REGULATOR 439 589 IPR045279 GO:0009736
Bma04g01144 709 MobiDBLite consensus disorder prediction 159 180 - -
Bma04g01144 709 MobiDBLite consensus disorder prediction 188 210 - -
Bma04g01144 709 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Bma04g01144 709 MobiDBLite consensus disorder prediction 159 210 - -
Bma04g01144 709 Gene3D - 33 166 - -
Bma04g01144 709 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 417 - -
Bma04g01144 709 SUPERFAMILY CheY-like 32 154 IPR011006 -
Bma04g01144 709 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Bma04g01144 709 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01144 Bma06g01483 CCT
Bma04g01144 Bma06g01483 ECH
Bma04g01144 Bma05g01022 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01144 Bma-Chr4:28858431 Bma07g00742 Bma-Chr7:20021750 6.43E-108 dispersed
Bma07g00088 Bma-Chr7:1669228 Bma04g01144 Bma-Chr4:28858431 5.80E-24 dispersed
Bma14g02067 Bma-Chr14:44031721 Bma04g01144 Bma-Chr4:28858431 7.06E-34 dispersed
Bma03g00399 Bma-Chr3:3021245 Bma04g01144 Bma-Chr4:28858431 1.89E-57 transposed
Bma04g00684 Bma-Chr4:6715450 Bma04g01144 Bma-Chr4:28858431 1.91E-30 transposed
Bma06g00755 Bma-Chr6:39148705 Bma04g01144 Bma-Chr4:28858431 2.27E-25 transposed
Bma08g00272 Bma-Chr8:3700275 Bma04g01144 Bma-Chr4:28858431 1.65E-55 transposed
Bma08g00430 Bma-Chr8:14813371 Bma04g01144 Bma-Chr4:28858431 1.74E-39 transposed
Bma14g00805 Bma-Chr14:8990345 Bma04g01144 Bma-Chr4:28858431 5.43E-53 transposed
Bma04g01144 Bma-Chr4:28858431 Bma05g01022 Bma-Chr5:48731842 0 wgd
Bma04g01144 Bma-Chr4:28858431 Bma05g01331 Bma-Chr5:52866826 1.29E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57229 PF00072 Response_reg 5.20E-22 CL0304 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01144 - K14491 qlo:115994534 784.252