Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g01144 | ATGAATCTGAATCAAGGCAAGGGATCTATGCCGACTGCTAGCTCTAGTACTGCTCTCAAATCCGGCGAATTTGTTTCCGACCAATTTCCGGCGGGTCTTCGAGTTCTGGTCGTCGATGACGATCCGACCTGCCTGAGGATCTTGGAGAAGATGCTTCAATTTTGTCTCTACGACGTTACTAAATGCAATCGAGCGGAGATTGCGTTGTCTAAGCTTCGAGATAACAAAAACGGCTTCGATGTTGTAATTAGTGATGTCCACATGCCAGATATGGATGGGTTTAAGCTCTTAGAACACATTGGCCTAGAAATGGACTTGCCCGTTATCATGATGTCAGCTGATGAAGGGAAAGATGTCGTCATGAAGGGAGTGACTCACGGTGCTTGTGATTATCTAATAAAACCCGTTCGAATTGAGGCTTTGAAGAACATATGGCAACATGTAGTGCGGAGGACGAAGAATGAGTGGAAAGATCTAGAACAATCTGGAAGTGTGGAAGACGGCGATAGGCTACAGAAAAATTGTGACGAAGTGGACTACTCATCCTCGGCAAAAGATGGAAATTGCAAAAACTCAAAGAGGAGGAAGGACGATGAAGAAAAAGCAGAGGAACGAGAAGATTCATCCACATTGAAGAAGCCACGTGTTGTTTGGACGGTCGAGCTTCATCAACAGTTTGTTGCCGCTGTTAATCAACTAGGCATTGAAAAGGCTGTTCCTAAGAAAATTTTGGAGTTGATGAATGTTCCAGGACTCACTCGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGTGTGTATTTGAGAAGGCTAAGTGGAGTTTCGCCACACCCGAGTAATTTGAACAATTCTTTCATGACCCCACAAGAAGCAATGTTCGGACCGATTTCAGCACTCAACGGGATTGATCTTCAGACACTTGCTGTTGCTGGAAAACTCACACCCCAAAGTCTTGCCTCACTTCAAGCTTCTGGGCTTGGTAGATCTTCGCCGAAATCCAGCGTAATTTCTGATCAGAGGAACATTTTTAGCTTTGAAAATCCAAAATTAAGATTTGGTGATGCCCAGCCTCAGCATGTCAACAGTAGTAAACCAATAAATTTACTCCATGGAATCCCCACCACTATGGAAGCAAAGCAGCTTGCAAATTTGAGCCAATCTGTACAATCTCAAGGAGGCATGAACATGCAAGGAAACATCCATGGAGGCCAAACCAACTCTTTATTAACGCAGATGGCACAACCTCAATCATCAATCAGGCAGTCGATCAGAATACCTGGTGGGGTTTTGACAAACAATCTACCTCCACCAGAAACTTCTATGTTCAATTTTCCAATGAACCAAACAGCCGACTTTCCAGGAAATAGTTTGCCTTTTCAAACAGCTCCAGCTATTGTTAGTCCTCCATCTAAAGGGCCATTCCTTGAAGAATCAAATCTAGAAATAAAACAATCGGGAAGATTTGTGTCAAATTATGATGTATTTGATGACTTGCACGAACAGAAATCTCGGGATTGGAACTTGCAGCATCCCGGCTTGAACTTCAATCCCTCTCATGGGGACCTGGATATCTCTTCCTCAGGTTTATATAATCAAAACTTTGCCAATTGCCCAAGGATTATACAGGAAATCAATGTTTCTGCGACTCGGCATGAGAATGGACAGACTGGCGGACAGCAACTGAATTCTGTACTTTTTGACAATTCAGTTAAGGTCGAAGCTGAGACAATTCCAGATCCGAGTTGTGTCTTATTTCCGGAAAACTTCGACAGTGATGATCTAATGAGTACCCTTTTGAGACAACAACAAGAAAATTTCAGACCCGGCTCCACCGAAAGCGAATACGACTTCGACAGAGCTGCTATGCGCACATCATGGACACGAGACAATCCAGGACGAAGGTTTCTTGCATGTCAAAAATATGAGCGAGGCACAAGAGGATGTGATTTTTTCACATGGTATGATCCACCAACGAAGGAGAGAGAGAAGAAGGTACTGAATCTATTACAGTCGCGACTTACGGAAACAGAAGCAAAGAACGTGAAGTTGCGAACGAAGCTATTATTTTTTAAGTCTTTGTGGATTGTCATGACCATTGTAGTTGCTCTTTTTGTATGCTACAAAATGTAA | 2130 | 43.05 | MNLNQGKGSMPTASSSTALKSGEFVSDQFPAGLRVLVVDDDPTCLRILEKMLQFCLYDVTKCNRAEIALSKLRDNKNGFDVVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADEGKDVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRRTKNEWKDLEQSGSVEDGDRLQKNCDEVDYSSSAKDGNCKNSKRRKDDEEKAEEREDSSTLKKPRVVWTVELHQQFVAAVNQLGIEKAVPKKILELMNVPGLTRENVASHLQKYRVYLRRLSGVSPHPSNLNNSFMTPQEAMFGPISALNGIDLQTLAVAGKLTPQSLASLQASGLGRSSPKSSVISDQRNIFSFENPKLRFGDAQPQHVNSSKPINLLHGIPTTMEAKQLANLSQSVQSQGGMNMQGNIHGGQTNSLLTQMAQPQSSIRQSIRIPGGVLTNNLPPPETSMFNFPMNQTADFPGNSLPFQTAPAIVSPPSKGPFLEESNLEIKQSGRFVSNYDVFDDLHEQKSRDWNLQHPGLNFNPSHGDLDISSSGLYNQNFANCPRIIQEINVSATRHENGQTGGQQLNSVLFDNSVKVEAETIPDPSCVLFPENFDSDDLMSTLLRQQQENFRPGSTESEYDFDRAAMRTSWTRDNPGRRFLACQKYERGTRGCDFFTWYDPPTKEREKKVLNLLQSRLTETEAKNVKLRTKLLFFKSLWIVMTIVVALFVCYKM | 709 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28858431 | 28869722 | - | Bma019870.1 | Bma04g01144 | 81513 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g01144 | 709 | CDD | REC_typeB_ARR-like | 35 | 149 | - | - | |
Bma04g01144 | 709 | Gene3D | - | 210 | 272 | - | - | |
Bma04g01144 | 709 | Pfam | Response regulator receiver domain | 35 | 143 | IPR001789 | GO:0000160 | |
Bma04g01144 | 709 | SUPERFAMILY | Homeodomain-like | 210 | 270 | IPR009057 | - | |
Bma04g01144 | 709 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 213 | 266 | IPR006447 | GO:0003677 | |
Bma04g01144 | 709 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 439 | 589 | - | - | |
Bma04g01144 | 709 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 9 | 417 | IPR045279 | GO:0009736 | |
Bma04g01144 | 709 | Coils | Coil | 659 | 686 | - | - | |
Bma04g01144 | 709 | SMART | REC_2 | 33 | 145 | IPR001789 | GO:0000160 | |
Bma04g01144 | 709 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 439 | 589 | IPR045279 | GO:0009736 | |
Bma04g01144 | 709 | MobiDBLite | consensus disorder prediction | 159 | 180 | - | - | |
Bma04g01144 | 709 | MobiDBLite | consensus disorder prediction | 188 | 210 | - | - | |
Bma04g01144 | 709 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 212 | 269 | IPR017930 | - | |
Bma04g01144 | 709 | MobiDBLite | consensus disorder prediction | 159 | 210 | - | - | |
Bma04g01144 | 709 | Gene3D | - | 33 | 166 | - | - | |
Bma04g01144 | 709 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 9 | 417 | - | - | |
Bma04g01144 | 709 | SUPERFAMILY | CheY-like | 32 | 154 | IPR011006 | - | |
Bma04g01144 | 709 | ProSiteProfiles | Response regulatory domain profile. | 34 | 149 | IPR001789 | GO:0000160 | |
Bma04g01144 | 709 | Pfam | Myb-like DNA-binding domain | 215 | 265 | IPR001005 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma04g01144 | Bma06g01483 | CCT | |
Bma04g01144 | Bma06g01483 | ECH | |
Bma04g01144 | Bma05g01022 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g01144 | Bma-Chr4:28858431 | Bma07g00742 | Bma-Chr7:20021750 | 6.43E-108 | dispersed | |
Bma07g00088 | Bma-Chr7:1669228 | Bma04g01144 | Bma-Chr4:28858431 | 5.80E-24 | dispersed | |
Bma14g02067 | Bma-Chr14:44031721 | Bma04g01144 | Bma-Chr4:28858431 | 7.06E-34 | dispersed | |
Bma03g00399 | Bma-Chr3:3021245 | Bma04g01144 | Bma-Chr4:28858431 | 1.89E-57 | transposed | |
Bma04g00684 | Bma-Chr4:6715450 | Bma04g01144 | Bma-Chr4:28858431 | 1.91E-30 | transposed | |
Bma06g00755 | Bma-Chr6:39148705 | Bma04g01144 | Bma-Chr4:28858431 | 2.27E-25 | transposed | |
Bma08g00272 | Bma-Chr8:3700275 | Bma04g01144 | Bma-Chr4:28858431 | 1.65E-55 | transposed | |
Bma08g00430 | Bma-Chr8:14813371 | Bma04g01144 | Bma-Chr4:28858431 | 1.74E-39 | transposed | |
Bma14g00805 | Bma-Chr14:8990345 | Bma04g01144 | Bma-Chr4:28858431 | 5.43E-53 | transposed | |
Bma04g01144 | Bma-Chr4:28858431 | Bma05g01022 | Bma-Chr5:48731842 | 0 | wgd | |
Bma04g01144 | Bma-Chr4:28858431 | Bma05g01331 | Bma-Chr5:52866826 | 1.29E-26 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57229 | PF00072 | Response_reg | 5.20E-22 | CL0304 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g01144 | - | K14491 | qlo:115994534 | 784.252 |